PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC047086.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family AP2
Protein Properties Length: 417aa    MW: 49105.2 Da    PI: 9.6765
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC047086.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.51e-10357155
           AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                  s y+GV+ +++++r++A+++d  ++ g +kr + g ++++e Aa+ ++ a++k++g
  EcC047086.20  3 SIYRGVTKHRWTKRFEAHLWDkTYSSG-SKRGRQGAYDSEEAAARTYDLAALKYYG 57
                  57*******************544476.788888********************98 PP
2AP230.11.2e-09100133137
           AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfg 37 
                   s+y+GV +++++grW+A+I       g +k+++lg++g
  EcC047086.20 100 SKYRGVARHHRNGRWEARIGRvH---G-NKYIYLGTYG 133
                   89****************98833...3.5********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.93E-14367No hitNo description
SuperFamilySSF541711.18E-13367IPR016177DNA-binding domain
PfamPF008472.7E-8357IPR001471AP2/ERF domain
PROSITE profilePS5103217.082465IPR001471AP2/ERF domain
SMARTSM003804.3E-15471IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-10465IPR001471AP2/ERF domain
SuperFamilySSF541713.99E-5100133IPR016177DNA-binding domain
PfamPF008472.0E-5100133IPR001471AP2/ERF domain
SMARTSM003800.0057101147IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.4E-4101132IPR001471AP2/ERF domain
PROSITE profilePS510328.847101132IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009506Cellular Componentplasmodesma
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003824Molecular Functioncatalytic activity
GO:0005509Molecular Functioncalcium ion binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
RSSIYRGVTK HRWTKRFEAH LWDKTYSSGS KRGRQGAYDS EEAAARTYDL AALKYYGPHV  60
FLNFQISEYE KSLEEMQSLS RDEYLASLRR HSQGFSRGVS KYRGVARHHR NGRWEARIGR  120
VHGNKYIYLG TYGPSLSLSL SLSLSTYMHV VHCTFFXXXX XXXXXXXXXX XXXXXXXXXX  180
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  240
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  300
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  360
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXQL PIPNLPDLFD EIDGFED
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.31e-62AP2 family protein