PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC047005.20 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | NF-YB | ||||||||
Protein Properties | Length: 111aa MW: 12595 Da PI: 4.5469 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 62.7 | 7.8e-20 | 11 | 82 | 3 | 74 |
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatl 74 ++d+ lP a +++i+k++lP + ++++da++++ ec +efi +v+se+++ c+re+++ti+++ +l al l EcC047005.20 11 KEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCNREEKRTIAPEHVLKALEVL 82 6899***************************************************************99766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 9.2E-28 | 8 | 82 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 8.06E-25 | 12 | 82 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.9E-22 | 14 | 79 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0015914 | Biological Process | phospholipid transport | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0000287 | Molecular Function | magnesium ion binding | ||||
GO:0004012 | Molecular Function | phospholipid-translocating ATPase activity | ||||
GO:0005524 | Molecular Function | ATP binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 111 aa Download sequence Send to blast |
MDPMDIVGKS KEDASLPKAT MTKIIKEMLP PDVRVARDAQ DLLIECCVEF INLVSSESNE 60 VCNREEKRTI APEHVLKALE VLFLVLFLFF YDTLALIIAF LLILHILLAS Y |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_B | 9e-25 | 12 | 88 | 12 | 87 | Transcription Regulator NC2 beta chain |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010031455.1 | 2e-53 | PREDICTED: protein Dr1 homolog isoform X1 | ||||
Refseq | XP_010031462.1 | 2e-53 | PREDICTED: protein Dr1 homolog isoform X1 | ||||
Refseq | XP_018723264.1 | 2e-53 | PREDICTED: protein Dr1 homolog isoform X1 | ||||
Refseq | XP_018723265.1 | 2e-53 | PREDICTED: protein Dr1 homolog isoform X1 | ||||
Swissprot | P49592 | 1e-52 | NC2B_ARATH; Protein Dr1 homolog | ||||
TrEMBL | A0A2I0IIR3 | 3e-52 | A0A2I0IIR3_PUNGR; Uncharacterized protein | ||||
STRING | XP_010031447.1 | 9e-53 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23090.2 | 1e-52 | nuclear factor Y, subunit B13 |
Publications ? help Back to Top | |||
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