PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC046982.20 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | B3 | ||||||||
Protein Properties | Length: 109aa MW: 12761.7 Da PI: 8.6451 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 37.1 | 5.6e-12 | 25 | 99 | 21 | 98 |
HH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 21 kfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +fa++h +++k +++t + s rs vkl+ + ++++++GW F+++ +L++g +++F+l++r++ ++v++f+ EcC046982.20 25 QFARQHiQENK-KERTFR---YSDRSRPVKLSRYTREIQVFFSAGWPAFARETHLCVGNVCMFELIDRDDIVFKVSIFS 99 68888853332.333455...466999999944455555***************************9999989999997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.1E-12 | 25 | 100 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.75E-10 | 25 | 100 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 8.4E-9 | 25 | 100 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.11E-8 | 25 | 99 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 109 aa Download sequence Send to blast |
MFHFVCYAIS IIVELYSRMG GGQCQFARQH IQENKKERTF RYSDRSRPVK LSRYTREIQV 60 FFSAGWPAFA RETHLCVGNV CMFELIDRDD IVFKVSIFSS GGKDQIHID |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010065666.1 | 1e-43 | PREDICTED: B3 domain-containing transcription factor VRN1 isoform X6 | ||||
TrEMBL | A0A059BAW7 | 4e-41 | A0A059BAW7_EUCGR; Uncharacterized protein | ||||
STRING | XP_010065661.1 | 1e-37 | (Eucalyptus grandis) |