PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC046982.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 286aa    MW: 32727 Da    PI: 8.1429
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC046982.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3421.6e-1327918100
                   --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-SS CS
            B3  18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrks 100
                   +pkkf++++g++   s  + le + + +W++ +  +k  ++ ++l kGW+eF +   +  g  vvFk++g+s+f  +v++f++s
  EcC046982.10   2 IPKKFLRRYGKD--LSSLVLLEVLGNSTWSMGV--EKLNDStVWLWKGWQEFMQHYSIGPGHLVVFKYKGNSTF--RVMIFDRS 79 
                   9********977..777999999**********..444444499**************************9999..9*999985 PP
2B3598.4e-19182276198
                   EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                   ffkv +++++ +++ + +p +f+++h +++k+e+ tl+    s rsW vkl+   ++ r+++++GW+ F+++ +L+eg ++vF+l++r++  ++v++
  EcC046982.10 182 FFKVVIRPSYIEHHVVHVPGRFVRQHiQENKKEG-TLR---YSDRSWPVKLSRYTRGIRVFFSAGWRAFARETHLCEGNVCVFELINRDDVVFKVSI 274
                   99************************74444333.555...477*******66666667***************************99999899999 PP

                   E- CS
            B3  97 fr 98 
                   f+
  EcC046982.10 275 FS 276
                   97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.493179IPR003340B3 DNA binding domain
PfamPF023625.8E-11278IPR003340B3 DNA binding domain
SMARTSM010190.0036279IPR003340B3 DNA binding domain
CDDcd100172.73E-8277No hitNo description
SuperFamilySSF1019364.51E-17279IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-16279IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.9E-21175277IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.69E-19176277IPR015300DNA-binding pseudobarrel domain
PfamPF023622.6E-16182277IPR003340B3 DNA binding domain
SMARTSM010193.4E-10182278IPR003340B3 DNA binding domain
PROSITE profilePS5086313.239182278IPR003340B3 DNA binding domain
CDDcd100171.96E-16182276No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
GIPKKFLRRY GKDLSSLVLL EVLGNSTWSM GVEKLNDSTV WLWKGWQEFM QHYSIGPGHL  60
VVFKYKGNST FRVMIFDRSA SEIDYSLSSI SNLGSGFISP KRENVIEVED SEDFAPCQKK  120
RVDPHSSCSQ PSPSYSSPDL EEGIGQSRCR ASHPEPNFGG PMSSWPLRSF ELACEFDSEY  180
PFFKVVIRPS YIEHHVVHVP GRFVRQHIQE NKKEGTLRYS DRSWPVKLSR YTRGIRVFFS  240
AGWRAFARET HLCEGNVCVF ELINRDDVVF KVSIFSSGGK DQIHID
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A2e-1416827534140B3 domain-containing transcription factor VRN1
4i1k_B2e-1416827534140B3 domain-containing transcription factor VRN1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010065661.11e-156PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1
RefseqXP_010065663.11e-156PREDICTED: B3 domain-containing transcription factor VRN1 isoform X4
TrEMBLA0A059BB471e-157A0A059BB47_EUCGR; Uncharacterized protein
STRINGXP_010065661.11e-155(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15912578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-32B3 family protein