PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC046833.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 519aa    MW: 57686.5 Da    PI: 6.7248
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC046833.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS307.14.2e-941495193374
          GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                   + L+e+A+a+ +g    a+++L rls   +p +++ q+l  y++ AL++r++      ++  pp ++    ++e++ +++ ++++sP++++++ +aN
  EcC046833.20 149 QSLVEAATAIYEGRVDVASEILRRLSAVPNPMANSEQKLRGYMLSALKSRVSP-----VDYPPPVAE--LFTEEHVLSVRSLYDLSPCFRLGFTAAN 238
                   78**************************************************9.....333333222..24789999999***************** PP

          GRAS 100 qaIleavege...ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                   +aIlea++++   +++H+iDfdi+  + +++Ll  L+ R+ +++ +l+iT+v++ + +++e+l  +g+rL+++A ++gv++ fn+ v ++l++l+ +
  EcC046833.20 239 HAILEAASEQpytNKLHVIDFDIGWEGPYLNLLYGLSRRQaSNQSTLKITTVAD-SFNDEERLMMLGDRLNELAGKMGVSLVFNI-VGQKLSELSRD 333
                   *********99999*************************967778*********.5569*************************9.7********** PP

          GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErel 289
                   +L ++p+E+laV l+l+l+r++desvs+e++rde+L+ vk+l P+vv++veq ++ n+++F  r+ ealeyy al++s+e ++p +s+er+  E+  
  EcC046833.20 334 SLGCEPDEVLAVILALKLYRMPDESVSVENTRDELLRRVKGLAPQVVTLVEQQMNGNTTPFTMRVGEALEYYGALLESIEYTVPWKSSERARAEEG- 429
                   ************************************************************************************************. PP

          GRAS 290 lgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.....sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                   l+r++ n vaceg++r+er+e ++kWr+r+++aGF+  pl++++a   + llr+++     + g++ +ee+g +++gW++r+L+++SaWr
  EcC046833.20 430 LSRKLGNSVACEGRDRVERCEVFGKWRARMGMAGFELRPLGQHVAGALNGLLRHIAshmtwNSGFTAKEEKGGICFGWRGRTLTVTSAWR 519
                   ***********************************************99999876521114578*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.067121494IPR005202Transcription factor GRAS
PfamPF035141.5E-91149519IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MERSAWPKSL SSGRKRAIQE LCGQNPMKLR DVFDAHSQTG DDPRQPSFAE DLIVSVLGSF  60
SNTQSLSSGA ESYEVLQVPS NAFVSSEVSE GSESIRSPVQ RSPVKNVKTF VQSFPVESVK  120
TPVWRLQRSP VESVNTHVQR PPVSILWEQS LVEAATAIYE GRVDVASEIL RRLSAVPNPM  180
ANSEQKLRGY MLSALKSRVS PVDYPPPVAE LFTEEHVLSV RSLYDLSPCF RLGFTAANHA  240
ILEAASEQPY TNKLHVIDFD IGWEGPYLNL LYGLSRRQAS NQSTLKITTV ADSFNDEERL  300
MMLGDRLNEL AGKMGVSLVF NIVGQKLSEL SRDSLGCEPD EVLAVILALK LYRMPDESVS  360
VENTRDELLR RVKGLAPQVV TLVEQQMNGN TTPFTMRVGE ALEYYGALLE SIEYTVPWKS  420
SERARAEEGL SRKLGNSVAC EGRDRVERCE VFGKWRARMG MAGFELRPLG QHVAGALNGL  480
LRHIASHMTW NSGFTAKEEK GGICFGWRGR TLTVTSAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B3e-3413951973473Protein SHORT-ROOT
5b3h_B2e-3413951919419Protein SHORT-ROOT
5b3h_E2e-3413951919419Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010039531.10.0PREDICTED: scarecrow-like protein 8
SwissprotQ9FYR71e-133SCL8_ARATH; Scarecrow-like protein 8
TrEMBLA0A059DD350.0A0A059DD35_EUCGR; Uncharacterized protein
STRINGXP_010043392.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43502856
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-135SCARECROW-like 8