PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC046825.20 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 100aa MW: 11467.8 Da PI: 5.1324 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 66.8 | 2.1e-21 | 5 | 51 | 5 | 51 |
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ++s ++tf+kRrn ++KKA+ LS LCdaev +iifs tg+lyeyss EcC046825.20 5 SSSSDHITFAKRRNSLMKKAKDLSQLCDAEVGIIIFSCTGQLYEYSS 51 678899***************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 19.554 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.2E-12 | 4 | 52 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.8E-18 | 6 | 49 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.09E-22 | 7 | 66 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.0E-14 | 15 | 30 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.0E-14 | 30 | 51 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 100 aa Download sequence Send to blast |
MNPHSSSSDH ITFAKRRNSL MKKAKDLSQL CDAEVGIIIF SCTGQLYEYS SSSMDSVIER 60 YTNLKREAQP ELDQPTFDAR VLEEEIANLN RQLQGLQEYH |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of flowering time in long-day photoperiod. Participates in the repression of FT expression and floral transition, by interacting closely with the FLC-SVP pathways (PubMed:24876250). Functions in the satellite meristemoid lineage of stomatal development (PubMed:17704216). {ECO:0000269|PubMed:17704216, ECO:0000269|PubMed:24876250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the micro RNA miR824. {ECO:0000269|PubMed:18579782}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010029963.1 | 1e-66 | PREDICTED: MADS-box transcription factor 23 isoform X2 | ||||
Refseq | XP_018717722.1 | 1e-67 | PREDICTED: MADS-box transcription factor 27 isoform X3 | ||||
Swissprot | A2RVQ5 | 6e-30 | AGL16_ARATH; Agamous-like MADS-box protein AGL16 | ||||
TrEMBL | A0A059ATD0 | 5e-50 | A0A059ATD0_EUCGR; Uncharacterized protein | ||||
STRING | XP_010029960.1 | 7e-66 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57230.1 | 3e-32 | AGAMOUS-like 16 |
Publications ? help Back to Top | |||
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