PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC046785.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

GRAS

Protein Properties

Length: 470aa MW: 53921.4 Da PI: 7.3223

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC046785.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	316.3	6.8e-97	90	466	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 l++lLl A+av+++++ la La+l + +s +gd++qR++ayf+ +L arl+ s + + ++t +ee+ a+++++ vsP+++f+h+t EcC046785.10 90 LIHLLLITATAVDENNAGLALDNLAELYQSVSLTGDSVQRVVAYFADGLVARLLTRKSPFHDMIMKRPT----CEEEFVAFTYLYRVSPYYQFAHFT 182 689*************************************************977777776666666....68999999************ PP GRAS 98 aNqaIleavegeerv.....HiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeel.gvpfefnvlvakrl 186 aNqaIlea+e+ee+v H+iDfd+s+G+QWp+L+q+L++++ +++ slRiTg+g+ s eel+et+ rL +f + + ++ fef+ l l EcC046785.10 183 ANQAILEAFEREEQVnhqalHVIDFDVSYGFQWPSLIQSLSDKAtsGNKISLRITGFGR----SPEELQETEGRLVSFSKGFkNIVFEFQGL----L 271 ********55555555*****************999756667*****....9************9857***8....6 PP GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283 +l +Lr k++E++aVnlv++l l + ++ ++e+Lk v s +P +v +veqe +++ sFl rf+e+l+y++a+fdsl+ lp es+er EcC046785.10 272 RGSKLVNLRKKKQETVAVNLVFHLNMLS-NFAK----ISETLKSVHSFKPSIVMLVEQEGNRSPRSFLSRFMESLHYFAAMFDSLDDCLPLESSERL 363 6667789***********999886.3333....457***************************************************** PP GRAS 284 kvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllr........kvk..sdgyrveee.sgslv.lgWkdrpL 367 ++E+ lg+ei+ e+++ r +r e++e+W+ r+e+ GF v+ls+k + qaklllr +++ + g+rv e+ +g ++ lgW+dr+L EcC046785.10 364 SIEKNHLGKEIKTRMNYEKDDrRCARYERMETWKGRMEAHGFAGVKLSSKSMLQAKLLLRirahhrplQFEgeNSGFRVIERdEGRAIsLGWQDRSL 460 **************9995779******************************832222222122123456665443666667**** PP GRAS 368 vsvSaW 373 +++SaW EcC046785.10 461 ITASAW 466 **** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	49.352	64	435	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.3E-94	90	466	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005886	Cellular Component	plasma membrane

Sequence ? help Back to Top
Protein Sequence Length: 470 aa Download sequence Send to blast
MEETEDQEEL LNLSLAIVSS GYGDEAKLRK RKRSISRDDN DVISNSSDAF EGCEGKIFKL 60 LQMREEMLHT EHKRSKQISP HHEDGKGLHL IHLLLITATA VDENNAGLAL DNLAELYQSV 120 SLTGDSVQRV VAYFADGLVA RLLTRKSPFH DMIMKRPTCE EEFVAFTYLY RVSPYYQFAH 180 FTANQAILEA FEREEQVNHQ ALHVIDFDVS YGFQWPSLIQ SLSDKATSGN KISLRITGFG 240 RSPEELQETE GRLVSFSKGF KNIVFEFQGL LRGSKLVNLR KKKQETVAVN LVFHLNMLSN 300 FAKISETLKS VHSFKPSIVM LVEQEGNRSP RSFLSRFMES LHYFAAMFDS LDDCLPLESS 360 ERLSIEKNHL GKEIKTRMNY EKDDRRCARY ERMETWKGRM EAHGFAGVKL SSKSMLQAKL 420 LLRIRAHHRP LQFEGENSGF RVIERDEGRA ISLGWQDRSL ITASAWHCVW

Sequence ? help Back to Top

Protein Sequence Length: 470 aa Download sequence Send to blast

MEETEDQEEL LNLSLAIVSS GYGDEAKLRK RKRSISRDDN DVISNSSDAF EGCEGKIFKL  60
LQMREEMLHT EHKRSKQISP HHEDGKGLHL IHLLLITATA VDENNAGLAL DNLAELYQSV  120
SLTGDSVQRV VAYFADGLVA RLLTRKSPFH DMIMKRPTCE EEFVAFTYLY RVSPYYQFAH  180
FTANQAILEA FEREEQVNHQ ALHVIDFDVS YGFQWPSLIQ SLSDKATSGN KISLRITGFG  240
RSPEELQETE GRLVSFSKGF KNIVFEFQGL LRGSKLVNLR KKKQETVAVN LVFHLNMLSN  300
FAKISETLKS VHSFKPSIVM LVEQEGNRSP RSFLSRFMES LHYFAAMFDS LDDCLPLESS  360
ERLSIEKNHL GKEIKTRMNY EKDDRRCARY ERMETWKGRM EAHGFAGVKL SSKSMLQAKL  420
LLRIRAHHRP LQFEGENSGF RVIERDEGRA ISLGWQDRSL ITASAWHCVW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-53	74	466	3	378	Protein SCARECROW
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010062016.1	0.0	PREDICTED: scarecrow-like protein 21
TrEMBL	A0A059BT15	0.0	A0A059BT15_EUCGR; Uncharacterized protein
STRING	XP_010062016.1	0.0	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G04890.1	3e-58	SCARECROW-like 21