PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC046643.30
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 816aa    MW: 91342.2 Da    PI: 4.8725
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC046643.30genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS358.21.2e-1094398131373
          GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                   l++lL+ cA+a+s++d++ a++lL++++e +sp+gd  qRla+yf+++L+arl++s s++ +  ++  +++++ +++l++l+l   ++P+ k+s + 
  EcC046643.30 439 LRTLLILCAQAISTSDFRTANELLKQIREYSSPSGDGSQRLAHYFANGLEARLVGSNSRTQDFYSTVVARRTSAADVLKVLHLHISTCPFKKLSIFF 535
                   5789****************************************************99999999999999999************************ PP

          GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                   aN +Il+ +e+++++H+iDf+i  G+QWp L+q+L+s++eg  +lRiTg++ p++g   +e++eetg+rL+k++e++ vpfefn+++++++e+++l 
  EcC046643.30 536 ANYMILKIAEKATTLHVIDFGIRFGFQWPVLIQKLSSQSEGRCKLRITGIELPQAGlrPAERIEETGRRLKKYCERFSVPFEFNFIASRNWESIKLA 632
                   *******************************************************9*****************************9999******** PP

          GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErel 289
                   +L+++++E++aVn+  + ++l+de+v+ +++rd+vL+l+++++P+++v++ ++ ++n++ F++rf e l + sa++d+++a+l ++ +er + Erel
  EcC046643.30 633 DLKIRSNETVAVNSLDRFQNLFDETVEDNNPRDAVLNLIREIKPDIFVHAISNGSYNAPFFVTRFREVLFHLSAIYDMFDATLDADCKERLVFEREL 729
                   ************************************************************************************************* PP

          GRAS 290 lgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                    grei+nv+aceg er+er et+++W+ r ++aGFk++pl+++ +k  + ++++ + + + ++e+ +++++gW++r ++  S+W
  EcC046643.30 730 YGREIMNVIACEGLERVERPETYKQWQVRTMRAGFKALPLDQELMKLFRGMMKESYHKDFALDEDGNWMLQGWRGRIIYGSSCW 813
                   ********************************************************888************************* PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098562.498413794IPR005202Transcription factor GRAS
PfamPF035144.2E-107439813IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 816 aa     Download sequence    Send to blast
MTMDPLNFDC SDCINVEDLP IDSRAFSPNP DQYPSLSDGF FLDDPFLDLK SSDSAFLSNK  60
VDPANDLPSK SIDLDIGDLI FPATSVSSGG GPFGPSMISS SGLSPGAYSL SPSGDTGSSD  120
PVLKYISQML MEENMEEQPW EFADQVALQN AEKSLYDALG QQHSEVSDQS PSQLDLSHYI  180
ESPTSSLSGS SSARGSHDAT SVTVSSCDSA DANILYTIEE HSQAVQENSD LDFQSNVDSS  240
SQLLSNSSSS ITNSDDWSEE SLHELLVKSI FSDSESMIQF KKGLEEASKF LPTNSQLGIN  300
PEDSKLPLER KKATPRTCIN KEINMRRSSD GSKGLKNHER DENAFEEGRA NKQTALYTED  360
SELSDLFDKV LLCNCSGDKS AETGLSKDIR LQRNERNYSG DISAETGLSK DIQPQKNKRG  420
SNRGRGRGKK QGSKNIVDLR TLLILCAQAI STSDFRTANE LLKQIREYSS PSGDGSQRLA  480
HYFANGLEAR LVGSNSRTQD FYSTVVARRT SAADVLKVLH LHISTCPFKK LSIFFANYMI  540
LKIAEKATTL HVIDFGIRFG FQWPVLIQKL SSQSEGRCKL RITGIELPQA GLRPAERIEE  600
TGRRLKKYCE RFSVPFEFNF IASRNWESIK LADLKIRSNE TVAVNSLDRF QNLFDETVED  660
NNPRDAVLNL IREIKPDIFV HAISNGSYNA PFFVTRFREV LFHLSAIYDM FDATLDADCK  720
ERLVFERELY GREIMNVIAC EGLERVERPE TYKQWQVRTM RAGFKALPLD QELMKLFRGM  780
MKESYHKDFA LDEDGNWMLQ GWRGRIIYGS SCWVPI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A4e-4144681525379Protein SCARECROW
5b3h_D4e-4144681525379Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018724301.10.0PREDICTED: LOW QUALITY PROTEIN: scarecrow-like protein 34
TrEMBLA0A059D5R30.0A0A059D5R3_EUCGR; Uncharacterized protein
STRINGXP_010043539.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14