PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC046643.30 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | GRAS | ||||||||
Protein Properties | Length: 816aa MW: 91342.2 Da PI: 4.8725 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 358.2 | 1.2e-109 | 439 | 813 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 l++lL+ cA+a+s++d++ a++lL++++e +sp+gd qRla+yf+++L+arl++s s++ + ++ +++++ +++l++l+l ++P+ k+s + EcC046643.30 439 LRTLLILCAQAISTSDFRTANELLKQIREYSSPSGDGSQRLAHYFANGLEARLVGSNSRTQDFYSTVVARRTSAADVLKVLHLHISTCPFKKLSIFF 535 5789****************************************************99999999999999999************************ PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlele 192 aN +Il+ +e+++++H+iDf+i G+QWp L+q+L+s++eg +lRiTg++ p++g +e++eetg+rL+k++e++ vpfefn+++++++e+++l EcC046643.30 536 ANYMILKIAEKATTLHVIDFGIRFGFQWPVLIQKLSSQSEGRCKLRITGIELPQAGlrPAERIEETGRRLKKYCERFSVPFEFNFIASRNWESIKLA 632 *******************************************************9*****************************9999******** PP GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErel 289 +L+++++E++aVn+ + ++l+de+v+ +++rd+vL+l+++++P+++v++ ++ ++n++ F++rf e l + sa++d+++a+l ++ +er + Erel EcC046643.30 633 DLKIRSNETVAVNSLDRFQNLFDETVEDNNPRDAVLNLIREIKPDIFVHAISNGSYNAPFFVTRFREVLFHLSAIYDMFDATLDADCKERLVFEREL 729 ************************************************************************************************* PP GRAS 290 lgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 grei+nv+aceg er+er et+++W+ r ++aGFk++pl+++ +k + ++++ + + + ++e+ +++++gW++r ++ S+W EcC046643.30 730 YGREIMNVIACEGLERVERPETYKQWQVRTMRAGFKALPLDQELMKLFRGMMKESYHKDFALDEDGNWMLQGWRGRIIYGSSCW 813 ********************************************************888************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 62.498 | 413 | 794 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.2E-107 | 439 | 813 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 816 aa Download sequence Send to blast |
MTMDPLNFDC SDCINVEDLP IDSRAFSPNP DQYPSLSDGF FLDDPFLDLK SSDSAFLSNK 60 VDPANDLPSK SIDLDIGDLI FPATSVSSGG GPFGPSMISS SGLSPGAYSL SPSGDTGSSD 120 PVLKYISQML MEENMEEQPW EFADQVALQN AEKSLYDALG QQHSEVSDQS PSQLDLSHYI 180 ESPTSSLSGS SSARGSHDAT SVTVSSCDSA DANILYTIEE HSQAVQENSD LDFQSNVDSS 240 SQLLSNSSSS ITNSDDWSEE SLHELLVKSI FSDSESMIQF KKGLEEASKF LPTNSQLGIN 300 PEDSKLPLER KKATPRTCIN KEINMRRSSD GSKGLKNHER DENAFEEGRA NKQTALYTED 360 SELSDLFDKV LLCNCSGDKS AETGLSKDIR LQRNERNYSG DISAETGLSK DIQPQKNKRG 420 SNRGRGRGKK QGSKNIVDLR TLLILCAQAI STSDFRTANE LLKQIREYSS PSGDGSQRLA 480 HYFANGLEAR LVGSNSRTQD FYSTVVARRT SAADVLKVLH LHISTCPFKK LSIFFANYMI 540 LKIAEKATTL HVIDFGIRFG FQWPVLIQKL SSQSEGRCKL RITGIELPQA GLRPAERIEE 600 TGRRLKKYCE RFSVPFEFNF IASRNWESIK LADLKIRSNE TVAVNSLDRF QNLFDETVED 660 NNPRDAVLNL IREIKPDIFV HAISNGSYNA PFFVTRFREV LFHLSAIYDM FDATLDADCK 720 ERLVFERELY GREIMNVIAC EGLERVERPE TYKQWQVRTM RAGFKALPLD QELMKLFRGM 780 MKESYHKDFA LDEDGNWMLQ GWRGRIIYGS SCWVPI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 4e-41 | 446 | 815 | 25 | 379 | Protein SCARECROW |
5b3h_D | 4e-41 | 446 | 815 | 25 | 379 | Protein SCARECROW |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018724301.1 | 0.0 | PREDICTED: LOW QUALITY PROTEIN: scarecrow-like protein 34 | ||||
TrEMBL | A0A059D5R3 | 0.0 | A0A059D5R3_EUCGR; Uncharacterized protein | ||||
STRING | XP_010043539.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM358 | 27 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 0.0 | SCARECROW-like 14 |