PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC046643.20

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

GRAS

Protein Properties

Length: 790aa MW: 88403.2 Da PI: 4.8494

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC046643.20	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	355.5	7.8e-109	414	787	2	373
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 +lL+ cA+a+s++d++ a++lL++++e++sp+gd qRla+yf+++L+arl+++ +++ + ++ +++++ ++ l+a++l ++P++k+s EcC046643.20 414 STLLILCAQAISTSDFRIANKLLKQIRENSSPSGDGSQRLAHYFANGLEARLVGNETRTQHFYSSLVARTTSAADILKAYRLHISTCPFIKLSICFG 510 579************************************************9877777777777777677********************* PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlelee 193 N +Il+ +e+++++HiiDf+i+ G+QWp L+q+L+sR+egp +lRiTg++ p++g +e+leetg rL++++e+++vpfefn +++k++e+++le+ EcC046643.20 511 NYMILRLAEKATTLHIIDFGIGFGFQWPILIQKLSSRSEGPCKLRITGIELPQAGfrPSERLEETGCRLERYCERFNVPFEFNCIASKNWESIKLED 607 **************************************************9**************************99****** PP GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErell 290 L+++++E++aVn++ + +llde+v + +rd+vL+l+++++P+++v+v ++ hn++ F++rf +al + s+++d+++a l +s+er +Ere+ EcC046643.20 608 LKIQSNETVAVNSSSRFGNLLDETVGDNCPRDAVLNLIWQIKPDIFVHVVSNGYHNAPFFVTRFRKALFHLSTVYDMFDAILDGDSNERLIIEREFH 704 ********************************************************************************************* PP GRAS 291 greivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 grei+nvvaceg er+er et+++W+ +aGFk++pl+++ ++ + +++++ + + ++++ ++++gW++r L+ +S+W EcC046643.20 705 GREIMNVVACEGLERVERPETYKQWQVCHVRAGFKAIPLDQELMTLFRGKMKECYHKDFVLNDDGYWMLQGWRGRILYGASCW 787 ***************************************************888*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	60.062	387	768	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.7E-106	414	787	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 790 aa Download sequence Send to blast
MDPLFFDSSA CIKVDDRPID SHAFSPSPDL YPSLTDGFFL DDPFLDLKSS DSAFLSNKVD 60 PANDLSSKSI DLGIGDLMFP STSGISDGGP FGPSMSLRSA LPPLGDTDSS DPVLKYISQI 120 LLEENMEEQL WEFADQVALQ NAEKSLYNAL GQQHSEVSDQ SPSQLDLSHY IKSPTSSLSG 180 SSSTRGSRDA TSVTVSSSDS AVANVLYTIE EHNHAVQENS DLDFQSNVDS SSWLLSNSSS 240 SITNYDDGSE ESLHELLVKS IFSDSESMVQ LKKGLEEASK FLPTNSQLGI NPEDSKPPLE 300 TEKGTPRMLI NEEINMRCLS DGFKGFKNHE RDEDAFEEGR ANKQTALYTE ESEFSDLFDR 360 LLLCNENGEA MCSGNKSVET GLSKDIRPQR KKRGSNRGRG RGKKLVSENT VDLSTLLILC 420 AQAISTSDFR IANKLLKQIR ENSSPSGDGS QRLAHYFANG LEARLVGNET RTQHFYSSLV 480 ARTTSAADIL KAYRLHISTC PFIKLSICFG NYMILRLAEK ATTLHIIDFG IGFGFQWPIL 540 IQKLSSRSEG PCKLRITGIE LPQAGFRPSE RLEETGCRLE RYCERFNVPF EFNCIASKNW 600 ESIKLEDLKI QSNETVAVNS SSRFGNLLDE TVGDNCPRDA VLNLIWQIKP DIFVHVVSNG 660 YHNAPFFVTR FRKALFHLST VYDMFDAILD GDSNERLIIE REFHGREIMN VVACEGLERV 720 ERPETYKQWQ VCHVRAGFKA IPLDQELMTL FRGKMKECYH KDFVLNDDGY WMLQGWRGRI 780 LYGASCWVPT

Sequence ? help Back to Top

Protein Sequence Length: 790 aa Download sequence Send to blast

MDPLFFDSSA CIKVDDRPID SHAFSPSPDL YPSLTDGFFL DDPFLDLKSS DSAFLSNKVD  60
PANDLSSKSI DLGIGDLMFP STSGISDGGP FGPSMSLRSA LPPLGDTDSS DPVLKYISQI  120
LLEENMEEQL WEFADQVALQ NAEKSLYNAL GQQHSEVSDQ SPSQLDLSHY IKSPTSSLSG  180
SSSTRGSRDA TSVTVSSSDS AVANVLYTIE EHNHAVQENS DLDFQSNVDS SSWLLSNSSS  240
SITNYDDGSE ESLHELLVKS IFSDSESMVQ LKKGLEEASK FLPTNSQLGI NPEDSKPPLE  300
TEKGTPRMLI NEEINMRCLS DGFKGFKNHE RDEDAFEEGR ANKQTALYTE ESEFSDLFDR  360
LLLCNENGEA MCSGNKSVET GLSKDIRPQR KKRGSNRGRG RGKKLVSENT VDLSTLLILC  420
AQAISTSDFR IANKLLKQIR ENSSPSGDGS QRLAHYFANG LEARLVGNET RTQHFYSSLV  480
ARTTSAADIL KAYRLHISTC PFIKLSICFG NYMILRLAEK ATTLHIIDFG IGFGFQWPIL  540
IQKLSSRSEG PCKLRITGIE LPQAGFRPSE RLEETGCRLE RYCERFNVPF EFNCIASKNW  600
ESIKLEDLKI QSNETVAVNS SSRFGNLLDE TVGDNCPRDA VLNLIWQIKP DIFVHVVSNG  660
YHNAPFFVTR FRKALFHLST VYDMFDAILD GDSNERLIIE REFHGREIMN VVACEGLERV  720
ERPETYKQWQ VCHVRAGFKA IPLDQELMTL FRGKMKECYH KDFVLNDDGY WMLQGWRGRI  780
LYGASCWVPT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-41	420	789	26	380	Protein SCARECROW
5b3h_A	2e-41	420	789	25	379	Protein SCARECROW
5b3h_D	2e-41	420	789	25	379	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010043537.1	0.0	PREDICTED: scarecrow-like protein 34
Swissprot	Q9XE58	0.0	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A059D567	0.0	A0A059D567_EUCGR; Uncharacterized protein
STRING	XP_010043537.1	0.0	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	0.0	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]