PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC046457.20 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 221aa MW: 24036.9 Da PI: 9.2216 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 42.1 | 2e-13 | 84 | 113 | 3 | 32 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpse 32 v+YkeClkNhAa++Gg+a+DGCg+ +++ EcC046457.20 84 VVKYKECLKNHAAAMGGTAMDGCGDIGAHS 113 689*********************977763 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 8.7E-10 | 85 | 116 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 14.66 | 87 | 145 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 0.002 | 89 | 120 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 6.57E-19 | 141 | 208 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.9E-31 | 141 | 209 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 2.3E-27 | 147 | 203 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007165 | Biological Process | signal transduction | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MELPSQDTDI PIPINSSFGG GHGGHLIHQP QQHDPSSAIA SHNNHINLPR IPSNGPPPQP 60 PPPPPPLEEP QPQHQHVMPY KKVVVKYKEC LKNHAAAMGG TAMDGCGDIG AHSHSGPSES 120 DDQEDGGGSG GGGGAGAIRA PHHQAVKKRF RTKFTQEQKE KMFSFAEKVG WKIQKQEESV 180 VQQFCQEIGV KRRVLKVWMH NNKHNLAKKN PSNNNTPSSL N |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh5_A | 2e-24 | 146 | 205 | 16 | 75 | ZF-HD homeobox family protein |
1wh7_A | 2e-24 | 148 | 205 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010065227.1 | 8e-63 | PREDICTED: zinc-finger homeodomain protein 4 | ||||
TrEMBL | A0A059B8L6 | 2e-61 | A0A059B8L6_EUCGR; Uncharacterized protein | ||||
STRING | XP_010065227.1 | 3e-62 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02540.1 | 4e-35 | homeobox protein 21 |