PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC046299.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C3H
Protein Properties Length: 806aa    MW: 90241.2 Da    PI: 9.1501
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC046299.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.96.4e-07182201525
                   --SGGGGTS--TTTTT-SS-S CS
       zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                   lC+ fa  G C++G  C+F H
  EcC046299.10 182 LCKEFAV-GRCRRGTDCRFLH 201
                   9******.************* PP
2zf-CCCH25.32.7e-08232253426
                   ---SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                   e+C++f+r GtC+ G++C+++H+
  EcC046299.10 232 EICNNFQR-GTCRWGASCRYIHS 253
                   89******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.197177204IPR000571Zinc finger, CCCH-type
SMARTSM003560.0015179203IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.2E-5179202IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.3E-5181202IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5227253IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-5228254IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.15228255IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-6231253IPR000571Zinc finger, CCCH-type
PfamPF006429.1E-6232253IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0004857Molecular Functionenzyme inhibitor activity
GO:0008270Molecular Functionzinc ion binding
GO:0016491Molecular Functionoxidoreductase activity
Sequence ? help Back to Top
Protein Sequence    Length: 806 aa     Download sequence    Send to blast
MSGKRRRHNS KWDLKEEPPV SPKKMDYRAW SGRADMPTYD SRIQPRRGSV DASHINGQRW  60
SSVEDKNVPK RHDLESSSRE FMLANRSLPR DGIGSADGGR KLDPVPWDRD GSYSTRMSPG  120
LDEWRKRNRS RSPRNKSDRS PGSRSRNWRI STSRSRSPVH GSRKDSGIYD KTRSRTGVSS  180
QLCKEFAVGR CRRGTDCRFL HQGDQQYNDN WESRHKKIGS TREYSERNRS SEICNNFQRG  240
TCRWGASCRY IHSDVPGKVY PKEAAATGEN DQRKRDLSLE LVGEGESHRR TVPSDPRITD  300
WSLNNRWEHK SGEERKLWDD QTKHNLLSID QKQLPPLESS VKLGMREPRA SEIFIGNTNM  360
SPDWNYQAQS SNQVTDDRSK ETYAAPSLIH NEPLVASRQL DQSLNASVQM YQLSATQRPG  420
TDESCLRIDN FRENGLLYNN NDNINKTVGL LTDSYIHPDT VQKQTIGQNN HKPCAMVPQM  480
SSVGQNQLGF PSDPRKAANI ISSLMKPLSE EGKPVNHPPV TDANTLQVTS ANPPVTAMVS  540
GEHLRQLNDL SASLAQIFEA GKQLPQIFTA FNTHQGVDMT SVQSLASLGD QATPFLSSLS  600
VGSQKHYDPI SDSIEPKKPD SNEKQVHLSD VVADDSTKVS SSSLPPPSVA VVPNGTVLHN  660
ASSSGGFHES HQTSLLEPAE SSKVKDSSKL REDGEKEKVS DESKKGKGKD PHEDEHLENR  720
EGGTKDEAYK TIVKKAVDKV TSTMQGASIP QSQEKIDHYL SFAQPKLTKL VQVSSFFLFI  780
YINSSLVNFF GSVVYVCVVC HLLIYV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125130KRNRSR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010027683.10.0PREDICTED: zinc finger CCCH domain-containing protein 38
RefseqXP_010027685.10.0PREDICTED: zinc finger CCCH domain-containing protein 38
RefseqXP_010027686.10.0PREDICTED: zinc finger CCCH domain-containing protein 38
RefseqXP_010027688.10.0PREDICTED: zinc finger CCCH domain-containing protein 38
RefseqXP_018718599.10.0PREDICTED: zinc finger CCCH domain-containing protein 38
TrEMBLA0A059AKN30.0A0A059AKN3_EUCGR; Uncharacterized protein
STRINGXP_010027683.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15764912