PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC046163.40
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB_related
Protein Properties Length: 225aa    MW: 25099.2 Da    PI: 8.8891
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC046163.40genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding452.4e-14140184347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+e+++ + k +G+g+Wk+I++++   +t+ q+ s+ qky
     EcC046163.40 140 AWTKEEHERFLGGLKIYGKGDWKSISKYVVMSKTPTQVASHAQKY 184
                      6*****************************999***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00717193491IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.7E-10131188IPR009057Homeodomain-like
PROSITE profilePS5129419.182133189IPR017930Myb domain
SuperFamilySSF466892.87E-16134189IPR009057Homeodomain-like
TIGRFAMsTIGR015573.0E-16136188IPR006447Myb domain, plants
SMARTSM007179.9E-10137187IPR001005SANT/Myb domain
CDDcd001673.20E-9140185No hitNo description
PfamPF002496.4E-12140184IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005777Cellular Componentperoxisome
GO:0005856Cellular Componentcytoskeleton
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MANAAFPTSA TFYQGCTSAE RSPEVGCRGC ENDGSGIWTF EENKRFKNAL ATLSGEIDLS  60
TLCDFVEVIA PEFPGKSVEQ VGRHLEALWQ DVHLIESGQV MFPEHWTVEE GDSDGGPLPV  120
QKSKRKSKVE SKGKRKRGIA WTKEEHERFL GGLKIYGKGD WKSISKYVVM SKTPTQVASH  180
AQKYFNRKDR TENQKLRRSI NDTHNISNIG AIASMSSSPP STRYP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010058477.11e-163PREDICTED: transcription factor DIVARICATA-like
TrEMBLA0A059ARW31e-143A0A059ARW3_EUCGR; Uncharacterized protein
STRINGXP_010058477.11e-163(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.12e-38MYB family protein