PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | EcC046003.20 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 122aa MW: 13995.1 Da PI: 8.2395 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 32.4 | 1.7e-10 | 11 | 102 | 2 | 80 |
EEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTH.HHHHHHHT--TT-EE CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesg.rsWevkliyrkksgryvltkGW.keFvkangLkegDfv 80 +k+l++sd + ++rl +p+ ++++ k++e+ ++++ de+ + + + y+ +sg+yvl+++W keFv+ gL egD + EcC046003.20 11 KKTLKKSDLGHLSRLLIPRAGVATYvlpcmdeerarRVKSNEGAEVVVWDEDThSEHHLVFAYWASSGSYVLKGCWmKEFVQRRGLAEGDEI 102 6999************************99988888444457889999998876566666677*************668***********66 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 5.1E-14 | 8 | 109 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.26E-14 | 10 | 118 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 2.8E-14 | 11 | 107 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.5E-7 | 12 | 103 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 122 aa Download sequence Send to blast |
LVLRYDPYKI KKTLKKSDLG HLSRLLIPRA GVATYVLPCM DEERARRVKS NEGAEVVVWD 60 EDTHSEHHLV FAYWASSGSY VLKGCWMKEF VQRRGLAEGD EIGIHWDPIA SKFDLSLLHK 120 AN |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010041685.1 | 3e-82 | PREDICTED: putative B3 domain-containing protein At1g78640 | ||||
TrEMBL | A0A059C5C5 | 6e-81 | A0A059C5C5_EUCGR; Uncharacterized protein | ||||
STRING | XP_010058649.1 | 2e-82 | (Eucalyptus grandis) | ||||
STRING | XP_010058653.1 | 2e-82 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G33720.1 | 8e-22 | B3 family protein |