PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC045976.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 284aa    MW: 32344.4 Da    PI: 4.5213
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC045976.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.69.7e-21152202255
           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   +ykGVr+++ +g+++AeIrdp++ng  +r++lg++ t+e+Aa a+++a+ k++g
  EcC045976.20 152 HYKGVRRRP-WGKYAAEIRDPKKNG--ARIWLGTYETPEDAALAYDRAAFKMRG 202
                   6********.***********9998..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.03E-32151212No hitNo description
SuperFamilySSF541711.5E-23152211IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.5E-32152211IPR001471AP2/ERF domain
PfamPF008471.2E-14152202IPR001471AP2/ERF domain
SMARTSM003802.9E-39152216IPR001471AP2/ERF domain
PROSITE profilePS5103223.762152210IPR001471AP2/ERF domain
PRINTSPR003675.4E-13153164IPR001471AP2/ERF domain
PRINTSPR003675.4E-13192212IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MLQEIFSPFE TDQFDALKSI CEHLFVGEDD SVDATSYAPT PANMYSRSSS FNNLLLMESW  60
SELPLKVDNL EDMLEYSTMC NELNSGWTMP SAQNQELDFE VTTVDYNNID LASNQELDFK  120
VTTVNYNSIG LVKEKKLEMV DQEVQVLVEK AHYKGVRRRP WGKYAAEIRD PKKNGARIWL  180
GTYETPEDAA LAYDRAAFKM RGSKAKLNFP HLIGSAEYEP VRVGRKRLSS EPSSPSTCSD  240
DSLMTRMKRR KREVNVDAEV DLGTPTPFPV LDMSFWSCDE QLVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-33152217570ATERF1
3gcc_A2e-33152217570ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018732614.10.0PREDICTED: ethylene-responsive transcription factor 13-like
TrEMBLA0A059BAV21e-130A0A059BAV2_EUCGR; Uncharacterized protein
STRINGXP_010068071.11e-169(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.11e-55ethylene-responsive element binding factor 13