PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC045880.40
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family Trihelix
Protein Properties Length: 631aa    MW: 70309.1 Da    PI: 5.5083
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC045880.40genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix94.41.1e-2954138187
      trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                   rW++qe+laL+++r++m+ ++r++++k+plWeevs+k++e g++rs+k+Ckek+en+ k++k++k+g+ +++  + +t+++fdqlea
  EcC045880.40  54 RWPRQETLALLKIRSDMDVTFRDSSAKGPLWEEVSRKLSELGYHRSAKKCKEKFENVFKYHKRTKDGRTGKH--EGKTYRFFDQLEA 138
                   8********************************************************************974..4557*******85 PP
2trihelix101.37.4e-32428512186
      trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                   rW+k ev aLi++r++++ +++++  k+plWe++s +mr+ g+ers+k+Ckekwen+nk++kk+ke++kkr  e+s+tcpyf+ql+
  EcC045880.40 428 RWPKVEVEALIRLRTNLDAKYQENGPKGPLWEDISVAMRRLGYERSSKRCKEKWENINKYFKKVKESNKKR-REDSKTCPYFQQLD 512
                   8*********************************************************************8.78999*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.25947111IPR017877Myb-like domain
SMARTSM007174.1E-451113IPR001005SANT/Myb domain
PfamPF138372.2E-1953138No hitNo description
CDDcd122032.55E-2453118No hitNo description
SMARTSM007170.03425487IPR001005SANT/Myb domain
PfamPF138371.1E-21427514No hitNo description
CDDcd122038.64E-26427492No hitNo description
PROSITE profilePS500906.992427485IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 631 aa     Download sequence    Send to blast
MMGDAPSVPG ASVDAAETVA AIAAVAGAAE VGSFTPNSGE EEGGRRREES GGNRWPRQET  60
LALLKIRSDM DVTFRDSSAK GPLWEEVSRK LSELGYHRSA KKCKEKFENV FKYHKRTKDG  120
RTGKHEGKTY RFFDQLEAFE NHTLHSSQPP PRPPAPAAQP PAMQAVIGPH SIPNVPTAAV  180
PLSTTHISNH HNNNINIIPQ NNLATSSTVL NFTMPSFPPP SNPTVVIPPP PPNSGFPRGA  240
RPGEPASNST SSSTFSDEGV PRGKRPNKWK RRWRDFFERV IKDVMDKQED LHRSFLEMID  300
KCERERAARE ESWWMQETAR LAREREILAQ ERLAAEAKDT AVMSFLQKIA EQQSRRSSPA  360
QNNNPLSQQL VAVPTPATPK PSTVPPPPPP AAAAAALPSQ MRSIEVPKAD NGVHFATPRG  420
GGAASSSRWP KVEVEALIRL RTNLDAKYQE NGPKGPLWED ISVAMRRLGY ERSSKRCKEK  480
WENINKYFKK VKESNKKRRE DSKTCPYFQQ LDELYREKSS KSGDLGSSTL FTCTTQFSPM  540
ISTAAPLMVA PEQQWPPPQQ LQQQQQQQQE MDEMEGDHIG ENQEDDDDDD DDDDPSNIDR  600
EEEEGEDDDG DDDGREFEIV ASKPSSMDAA E
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010063871.10.0PREDICTED: trihelix transcription factor GT-2
TrEMBLA0A059BYW10.0A0A059BYW1_EUCGR; Uncharacterized protein
STRINGXP_010063871.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59952847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-76Trihelix family protein