PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC045826.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 295aa    MW: 31650.2 Da    PI: 6.9137
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC045826.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.39.5e-101154344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +W+ e d+ + +a + ++ +   +W++Ia  ++ g+t +++k ++
     EcC045826.20 11 SWSREQDKSFENALATYPEDsadRWEKIATDVP-GKTVEEIKRHY 54
                     6********************************.**********9 PP
2Myb_DNA-binding45.61.6e-14122166347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ + +++G+g+W++I+r +  +Rt+ q+ s+ qky
     EcC045826.20 122 AWTEEEHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKY 166
                      6*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.677762IPR017884SANT domain
SMARTSM007172.9E-8860IPR001005SANT/Myb domain
SuperFamilySSF466891.86E-111165IPR009057Homeodomain-like
CDDcd001679.33E-91154No hitNo description
PfamPF002494.7E-81154IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-51164IPR009057Homeodomain-like
PROSITE profilePS5129418.201114171IPR017930Myb domain
SuperFamilySSF466892.84E-17117172IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-17119169IPR006447Myb domain, plants
SMARTSM007171.1E-11119169IPR001005SANT/Myb domain
PfamPF002492.2E-12122166IPR001005SANT/Myb domain
CDDcd001673.50E-11122167No hitNo description
Gene3DG3DSA:1.10.10.601.1E-11122165IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MTVDETTSDC SWSREQDKSF ENALATYPED SADRWEKIAT DVPGKTVEEI KRHYEILVDD  60
VNSIESGCVE LPPYSCSPEG STSHGGDEMN GKKGSHVGNL HGNLNHGGKA SRSDQERRKG  120
IAWTEEEHRL FLLGLEKYGK GDWRSISRNF VVTRTPTQVA SHAQKYFIRL NSMNKDRRRS  180
SIHDITSVDN GEVSTPQGPI TGQTSSSVAG VSSSKPSKQP FQPTTGPASI GVYGAPMIGQ  240
PIGGPLVSAV GTPVNLPGPS HMAYGVAPVP GAMVPGAPMS VGHVTYPMPH ASAQR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-1612741173RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00500DAPTransfer from AT5G08520Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010067021.10.0PREDICTED: transcription factor DIVARICATA
RefseqXP_010067022.10.0PREDICTED: transcription factor DIVARICATA
RefseqXP_010067023.10.0PREDICTED: transcription factor DIVARICATA
RefseqXP_010067024.10.0PREDICTED: transcription factor DIVARICATA
RefseqXP_010067025.10.0PREDICTED: transcription factor DIVARICATA
SwissprotQ9FNN61e-122SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A059BG480.0A0A059BG48_EUCGR; Uncharacterized protein
STRINGXP_010067021.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35562861
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-108MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]