PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC045730.30 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | NAC | ||||||||
Protein Properties | Length: 300aa MW: 34120.5 Da PI: 6.9068 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 106.3 | 3.8e-33 | 57 | 197 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......sg 81 lp+G++F+Ptd+e++ e+L++k+ g+ + +++i++++ i+ ++P++Lp v+++ + +fF++ +k+yatg+rk+r ++ + EcC045730.30 57 LPAGVKFDPTDQEIL-EHLEAKIMGDArkihflI--DQFIPTLEgddgICCTHPERLP-GVSKDGQIRHFFHRPSKAYATGTRKRRRVQknmdetET 149 799***********9.99******9995654321..233444423345**********.555666777******************63334444478 PP NAM 82 yWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +W++tgk+++vl+ +g+++g kk+Lv+y gr++k+ekt+Wvmh+y+l EcC045730.30 150 RWHKTGKTRPVLA-GGAVKGFKKILVLYinYGRQRKPEKTNWVMHQYHL 197 9************.9*************87789**************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.93E-37 | 49 | 216 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 32.596 | 57 | 216 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.0E-15 | 58 | 197 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0015074 | Biological Process | DNA integration | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003924 | Molecular Function | GTPase activity | ||||
GO:0005525 | Molecular Function | GTP binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MTWQTEDARA IIPPTYNPRD EDENDDNTLL PTIVCPSCGQ SFPLVDQREI VHDLVGLPAG 60 VKFDPTDQEI LEHLEAKIMG DARKIHFLID QFIPTLEGDD GICCTHPERL PGVSKDGQIR 120 HFFHRPSKAY ATGTRKRRRV QKNMDETETR WHKTGKTRPV LAGGAVKGFK KILVLYINYG 180 RQRKPEKTNW VMHQYHLGKN EEERDGELVV SKVFYQTQPR QPSSTTVKEP KDKTPKSDQS 240 LHENVHVPRG SINVMECYGN APYSESYDQL IIPDFLDQGE AASLVPLGED SSKGKLVKYQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 134 | 138 | RKRRR |
2 | 135 | 139 | KRRRV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010052263.1 | 0.0 | PREDICTED: NAC domain-containing protein 73 | ||||
Refseq | XP_018727657.1 | 0.0 | PREDICTED: NAC domain-containing protein 73 | ||||
Swissprot | O49459 | 1e-99 | NAC73_ARATH; NAC domain-containing protein 73 | ||||
TrEMBL | A0A059CCL2 | 0.0 | A0A059CCL2_EUCGR; Uncharacterized protein | ||||
STRING | XP_010052263.1 | 0.0 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28500.1 | 1e-102 | NAC domain containing protein 73 |
Publications ? help Back to Top | |||
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