PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC045730.120 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | NAC | ||||||||
Protein Properties | Length: 281aa MW: 31659.6 Da PI: 7.6411 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 102.7 | 4.8e-32 | 38 | 178 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......s 80 lp+G++F+Ptd+e++ e+L++k+ g+ + +++i++++ i+ ++P++Lp v+++ + fF++ +k+yatg+rk+r ++ + EcC045730.120 38 LPAGVKFDPTDQEIL-EHLEAKIMGEVrkihflI--DQFIPTLEgddgICCSHPERLP-GVSKDGQVRLFFHRPSKAYATGTRKRRRVQknadesE 129 799***********9.99******9995554321..233444423345**********.5566677889*****************6333455558 PP NAM 81 gyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +W++tgk+++vl+ ++ ++g kk+Lv+y gr++k+ekt+Wvmh+y+l EcC045730.120 130 TRWHKTGKTRSVLA-GSVVKGFKKILVLYnnYGRQRKPEKTNWVMHQYHL 178 89************.99************65579**************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.75E-35 | 29 | 197 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 32.38 | 38 | 197 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.5E-15 | 39 | 178 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0015074 | Biological Process | DNA integration | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003924 | Molecular Function | GTPase activity | ||||
GO:0005525 | Molecular Function | GTP binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
DDDEDDDNSL LPTITCPSCG HSFPMFDQRG IVHDLGGLPA GVKFDPTDQE ILEHLEAKIM 60 GEVRKIHFLI DQFIPTLEGD DGICCSHPER LPGVSKDGQV RLFFHRPSKA YATGTRKRRR 120 VQKNADESET RWHKTGKTRS VLAGSVVKGF KKILVLYNNY GRQRKPEKTN WVMHQYHLGN 180 SEEERDGELV VSKVFYQTQP RQPSSTNLKD PKDKMPKSAQ SWNEDGHVLR SSSNAIGYYS 240 DPPCRVSSDQ LIIPNFAVHG EAASLVPLIE DSNKGKLVKY S |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 115 | 119 | RKRRR |
2 | 116 | 120 | KRRRV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010052267.1 | 0.0 | PREDICTED: NAC domain-containing protein 73 | ||||
Swissprot | O49459 | 2e-99 | NAC73_ARATH; NAC domain-containing protein 73 | ||||
TrEMBL | A0A059CCL7 | 0.0 | A0A059CCL7_EUCGR; Uncharacterized protein | ||||
STRING | XP_010052267.1 | 0.0 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28500.1 | 1e-102 | NAC domain containing protein 73 |
Publications ? help Back to Top | |||
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