PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC045722.50
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 270aa    MW: 30895.1 Da    PI: 10.3691
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC045722.50genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3444.1e-14170253293
                   EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
            B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                   +k ++ps+v+   +l l+ +f+++  ++k+ +  +tl de+g+++   +  rk++    l++GWk+F  a++L +gD vvF+l++   ++++
  EcC045722.50 170 VKSMLPSHVSGGFWLGLSVQFCKSS-LPKNDG-VITLVDEDGEEFPTIYLARKTG----LSGGWKGFSVAHELTDGDAVVFQLIKP--TTMK 253
                   6899******************766.555444.8***************656665....***********************9973..3333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.1E-17161258IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.3E-21162258IPR015300DNA-binding pseudobarrel domain
CDDcd100175.59E-21167254No hitNo description
SMARTSM010198.8E-18169261IPR003340B3 DNA binding domain
PROSITE profilePS5086310.56169260IPR003340B3 DNA binding domain
PfamPF023622.6E-12170254IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0051026Biological Processchiasma assembly
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005524Molecular FunctionATP binding
GO:0008094Molecular FunctionDNA-dependent ATPase activity
GO:0050662Molecular Functioncoenzyme binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MVAAKPKESY EECRRKRLEE NKKRMEALNL PQLSQSLRSS SSSPNSTPMK QSKPRTVEKR  60
VVVVRRSSRV ANMPAPVYRE VVIDRVAVPR RYFVISFIFM LILLRNDFQD SKKSAYFAIE  120
ITKLFMKIDR IFKRRDPLNL VYASAEAREY ALEKAEQLQS TLEPQYPTLV KSMLPSHVSG  180
GFWLGLSVQF CKSSLPKNDG VITLVDEDGE EFPTIYLARK TGLSGGWKGF SVAHELTDGD  240
AVVFQLIKPT TMKVVMMRLH MRLEIHFLAS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010061766.11e-132PREDICTED: B3 domain-containing protein At5g42700 isoform X2
TrEMBLA0A059BSX91e-130A0A059BSX9_EUCGR; Uncharacterized protein
STRINGXP_010061764.11e-129(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.16e-56B3 family protein