PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC045571.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | AP2 | ||||||||
Protein Properties | Length: 486aa MW: 52751.5 Da PI: 7.8913 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.6 | 2.8e-17 | 172 | 221 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta+ Aa+a+++a+ k++g EcC045571.10 172 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAYAAARAYDRAAIKFRG 221 78*******************......55************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 8.4E-9 | 172 | 221 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.77E-15 | 172 | 231 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 6.08E-12 | 173 | 231 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 9.8E-17 | 173 | 229 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.3E-32 | 173 | 235 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.517 | 173 | 229 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 0.002 | 265 | 313 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 486 aa Download sequence Send to blast |
MLDLNLEMIS SDSSCDNDKN QIDVQEREEE AATKLHEASG NYDMEEDSGT SNSTIVASAE 60 EASGNAGEEN SSNTTSSSSI FYIMKEKEKG SKGGFKAGDP PPSPPGLITR QLFPVAGAGE 120 HGHQVAELGL GLPARQQWLN LSFGEPTGAP TEFRILQPKQ RKSRRGPRSR SSQYRGVTFY 180 RRTGRWESHI WDCGKQVYLG GFDTAYAAAR AYDRAAIKFR GVDADINFNI SDYEEDMKQM 240 VNLSKEEFVQ ILRRQSTGIS RGSSKHRGMT LQKCGRWDAR AGPLLGNKAS DNAANKCNGM 300 EAVMNFQPGS YEGDTKPYPR AGGSGHNLDL SLGMSLPSSS SMGAGTQRDM LFHCADHEMP 360 NTVMVGCSSS AHKGGELPNI GMASRSSPIW STLYPALAPN YEGKAMEKRA EAIPALRFSS 420 YRLPVHGNVN NANNGSQQAQ LFTYAASSGF SSSTATPHPP PQLPVSLQKN GVHNNTASRA 480 YFSYRS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010067253.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-7 isoform X2 | ||||
TrEMBL | A0A059BGW4 | 0.0 | A0A059BGW4_EUCGR; Uncharacterized protein | ||||
STRING | XP_010067252.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16464 | 10 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.2 | 1e-68 | related to AP2.7 |