PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC045502.50
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C3H
Protein Properties Length: 451aa    MW: 47621.2 Da    PI: 8.2937
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC045502.50genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.94.2e-093355527
                  --SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH  5 lCrffartGtCkyGdrCkFaHgp 27
                   C +++rtG C yG+ C+F+H++
  EcC045502.50 33 DCIYYLRTGNCGYGAGCRFNHPR 55
                  7********************96 PP
2zf-CCCH38.51.9e-1277101327
                   S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                   +++C+f++rtGtCk+G++Ck++H++
  EcC045502.50  77 QPNCQFYMRTGTCKFGASCKYHHPR 101
                   789********************96 PP
3zf-CCCH35.12.2e-11122147227
                   -S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                   ++++C+f+ +tG Ck+G++CkF+H++
  EcC045502.50 122 GEKECSFYVKTGRCKFGATCKFHHPQ 147
                   6789********************97 PP
4zf-CCCH36.86.7e-12284310127
                   --S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                   +++++C+++++tG C+yG++Ck++H+p
  EcC045502.50 284 PGQPECQHYLKTGDCRYGSSCKYHHPP 310
                   5789*********************97 PP
5zf-CCCH28.23.3e-09332354326
                   S---SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                    ++C++far G+Ck+G+ Ck+ H+
  EcC045502.50 332 APPCMHFAR-GECKFGPACKYDHS 354
                   689******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902296.02E-62857IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.8962856IPR000571Zinc finger, CCCH-type
SMARTSM003566.9E-42855IPR000571Zinc finger, CCCH-type
PfamPF006425.2E-73255IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-43455IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-574101IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.17874102IPR000571Zinc finger, CCCH-type
PfamPF006425.6E-1077101IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.06E-678102IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.0E-480102IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.009120148IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-5120147IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-6122148IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-8122147IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-4126146IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-6283310IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.361283311IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-9285310IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.11E-5287311IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-4289309IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-5329355IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.746329356IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-7332354IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003690Molecular Functiondouble-stranded DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MWQLGFGSGG GGGGGEGEGE PDLAYPERTE AADCIYYLRT GNCGYGAGCR FNHPRDRSTV  60
MGATRAGGAE YPERAGQPNC QFYMRTGTCK FGASCKYHHP RHGAGSSSPA PLNLCGYPFR  120
QGEKECSFYV KTGRCKFGAT CKFHHPQPAG VHVHAPSPPL QVAPPPIPVA PPSSYPAMQS  180
PSVPSSQQYG VVMARPPLVP SYVQGPYGPL LVSPSIFPSW NPYQAPVSPL ASSSPQAGSG  240
SSSVYGVTQL SPSAPAFPWP YQPSPSSLGP SVNGRREQSF PVRPGQPECQ HYLKTGDCRY  300
GSSCKYHHPP DWNALNVNIV LSPTGLPIQP GAPPCMHFAR GECKFGPACK YDHSFGPPSY  360
SPSVSSLGDP FPAGFPFGML FPSYSSPELR AEIISGPTED SLPTRSSSTT SMSVTSVGSA  420
RASSGPTPSQ LPDLSSTNLA NCNTKDRHSP G
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018716907.10.0PREDICTED: zinc finger CCCH domain-containing protein 34 isoform X5
TrEMBLA0A059B4D70.0A0A059B4D7_EUCGR; Uncharacterized protein
STRINGXP_010024647.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17792786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.11e-112C3H family protein