PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC045409.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | GRAS | ||||||||
Protein Properties | Length: 129aa MW: 14578.6 Da PI: 4.5417 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 69.7 | 5.6e-22 | 1 | 123 | 7 | 133 |
GRAS 7 ecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIl 103 e+A+a+ +g+ a++++ rls + +p ++ q+l y++ L++r++ + pps ++ ++e++ + + ++e+sP++ +++++aN+aIl EcC045409.10 1 EAATAIYEGKVDVASEIMRRLSAMPNPMSNSKQKLMEYMLSVLKSRVSP-----V-DYPPSVAE-LFTEEHVLSARSLYELSPCFWLGFMAANNAIL 90 589*********************************************9.....2.23333332.236777888899******************** PP GRAS 104 eavege...ervHiiDfdisqGlQWpaLlqaLa 133 ea++++ +++H+ Dfdi+ Q+ +Ll +++ EcC045409.10 91 EAASEQpstNKLHVFDFDIGWEQQYNNLLLEIS 123 ****9999999*****************98775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 17.276 | 1 | 129 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.9E-19 | 1 | 123 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0015074 | Biological Process | DNA integration | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 129 aa Download sequence Send to blast |
EAATAIYEGK VDVASEIMRR LSAMPNPMSN SKQKLMEYML SVLKSRVSPV DYPPSVAELF 60 TEEHVLSARS LYELSPCFWL GFMAANNAIL EAASEQPSTN KLHVFDFDIG WEQQYNNLLL 120 EISYNMGLH |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018727332.1 | 8e-76 | PREDICTED: scarecrow-like protein 8 isoform X1 | ||||
Refseq | XP_018727334.1 | 7e-76 | PREDICTED: scarecrow-like protein 8 isoform X2 | ||||
Swissprot | Q9FYR7 | 3e-29 | SCL8_ARATH; Scarecrow-like protein 8 | ||||
TrEMBL | A0A059DD35 | 2e-63 | A0A059DD35_EUCGR; Uncharacterized protein | ||||
STRING | XP_010066861.1 | 1e-66 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52510.1 | 1e-31 | SCARECROW-like 8 |