PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC045220.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C3H
Protein Properties Length: 709aa    MW: 78121.3 Da    PI: 5.266
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC045220.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.54.2e-07127149326
                   S---SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                    ++C ff++ G+C  GdrC F Hg
  EcC045220.10 127 PVPCVFFQK-GICLKGDRCAFLHG 149
                   579******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.8032554IPR000571Zinc finger, CCCH-type
SMARTSM003560.00182653IPR000571Zinc finger, CCCH-type
PfamPF156633.3E-112680No hitNo description
PROSITE profilePS5010310.9815682IPR000571Zinc finger, CCCH-type
SMARTSM003560.35881IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-5124150IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.333124151IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.1E-5125149IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-5126150IPR000571Zinc finger, CCCH-type
PfamPF146080.025129149No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 709 aa     Download sequence    Send to blast
MVPGTRDATN QPSHASAASA EEEALKRNTD CVYFLASPLT CKKGSECEYR HSEYARVNPR  60
DCWYWLNGSC LNPKCAFRHP PLDGLLGAPA AVPGGSSLPV QPPAMPPAMP PAMPPVAQAS  120
YNSGKQPVPC VFFQKGICLK GDRCAFLHGT NTVVSKVQQA PASTPVNDSS TVKKPFGSLE  180
KCSQGQKVPP NASKLTSRPS ELKPFPKVEN AIPRNEVSIE KSAPPSLPPP RIIDEGASRY  240
RPSSTPTVNG NLQNRTSRLH QPVVADDYHS SHKDKEADEY LRESSPGFDV LVDDELGESD  300
YYHNDDQFGR GRTHEGRNIG SVTDYDLDCP GDYSADIEHE MFRDPRAYDS FDRRYGWDQR  360
QDSSDLILGG PILRERRAYP KSDSPEHADD SDLRHRLSKH RRVNGLRSVV VPDSHVADRT  420
YRGSSRRDSQ HSSSHEGQGS SRLKGRIKFP GRLNGGDVNS DRETETGRNP GRSYQGVNRL  480
RDRLKGRAQD DYNVEARNFQ GPRMRRESVD EKSINFVGPK SLAELKGLGR GQESSPSMGK  540
QQNCSLDQPL GDVSFEGPKP LSVLLKRKRE PEGTGSGSRS SASKEEHSHE VNSQKHGDLT  600
IHPKEEEDSY KSKSGTADAV GSNKDHTEGA SSAVHGEIEN EDGMIVEDAT EDPELGADDQ  660
RDGDYYEQGD EGDYNYEEGE NAEGDGEEEE YLDDEDGDDF AKKVGVMFS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1496505RNFQGPRMRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010066967.10.0PREDICTED: zinc finger CCCH domain-containing protein 17
TrEMBLA0A059BFN40.0A0A059BFN4_EUCGR; Uncharacterized protein
STRINGXP_010066967.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM89681215