PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC045187.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 273aa    MW: 31307.7 Da    PI: 5.3944
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC045187.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding461.2e-141158148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd +lv+ +   G ++W+t+++  g+ R++k+c++rw +yl
     EcC045187.20 11 RGPWTIEEDHKLVNFILNNGIHCWRTVPKLAGLLRCGKSCRLRWINYL 58
                     89******************************99************97 PP
2Myb_DNA-binding57.62.9e-1864107146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++T+ E+ ++++++ +lG++ W++Ia++++ gRt++++k++w++
     EcC045187.20  64 RGAFTEMEENQIIQLHSRLGNR-WSKIASHFP-GRTDNEIKNHWNT 107
                      89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.1E-21261IPR009057Homeodomain-like
PROSITE profilePS5129413.646658IPR017930Myb domain
SuperFamilySSF466897.11E-298105IPR009057Homeodomain-like
SMARTSM007172.8E-71060IPR001005SANT/Myb domain
PfamPF002493.2E-121158IPR001005SANT/Myb domain
CDDcd001671.93E-51358No hitNo description
PROSITE profilePS5129426.86159113IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.2E-2662114IPR009057Homeodomain-like
SMARTSM007173.3E-1763111IPR001005SANT/Myb domain
PfamPF002491.3E-1664107IPR001005SANT/Myb domain
CDDcd001674.32E-1266107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
QPCCDKVGLK RGPWTIEEDH KLVNFILNNG IHCWRTVPKL AGLLRCGKSC RLRWINYLRP  60
DLKRGAFTEM EENQIIQLHS RLGNRWSKIA SHFPGRTDNE IKNHWNTRIK KKLKQLGLDP  120
ISHQPITEED HSKNGDEEGQ TNSSKEEEGV LSKIKSMDTQ EQQEQPHLKL DEATDFLLNN  180
YELLLCGSLD DGMQGLNQES NRSISQSSNS ICREDSSQNQ SNSNGESNCS SSSLQEHHNG  240
GGVQQWVDSV DSMLSWDGFD FLEQELFYFE DRF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-2891135108B-MYB
1gv2_A7e-2891132105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010033365.10.0PREDICTED: myb-related protein 315
SwissprotP813945e-79MYB15_ANTMA; Myb-related protein 315
TrEMBLA0A059AG380.0A0A059AG38_EUCGR; Uncharacterized protein
STRINGXP_010033365.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.11e-81myb domain protein 40
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]