PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | EcC045149.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 241aa MW: 27074.5 Da PI: 8.3 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 126.6 | 2e-39 | 4 | 135 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 p GfrF Pt+eel+++yL+++++g k ++++vi+ ++i+++ePw+Lp+ +++++++w+fF++ ++++a+g r++r+ ++gyWkatg+ v+ EcC045149.10 4 PTGFRFYPTEEELISFYLHNQLHGLKqDKIHRVIPVLHIFDTEPWNLPQlageLCREDREQWFFFAPMQEREARGGRPSRSLATGYWKATGSPGYVY 100 89*********************9884666778***************656654445677************************************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 s +++++g+kk++vfy g+apkg+kt+W ++ yr+ EcC045149.10 101 SPDNKVIGVKKSMVFYVGKAPKGRKTQWKLNKYRA 135 *********************************95 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.32E-43 | 2 | 166 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 43.669 | 3 | 167 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.9E-19 | 4 | 134 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 241 aa Download sequence Send to blast |
MEYPTGFRFY PTEEELISFY LHNQLHGLKQ DKIHRVIPVL HIFDTEPWNL PQLAGELCRE 60 DREQWFFFAP MQEREARGGR PSRSLATGYW KATGSPGYVY SPDNKVIGVK KSMVFYVGKA 120 PKGRKTQWKL NKYRAIELSP TNPNSSSSNI SIPKLKREFT LCRVYVVSGT SRAFDRRPLE 180 VVAGETTIQG DGCAASSGGR GAGCADVSSS GLVAGDVGSS NQWETASLEE PMWDWDQLNW 240 L |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-31 | 1 | 165 | 15 | 163 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-31 | 1 | 165 | 15 | 163 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-31 | 1 | 165 | 15 | 163 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-31 | 1 | 165 | 15 | 163 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-31 | 1 | 165 | 18 | 166 | NAC domain-containing protein 19 |
3swm_B | 3e-31 | 1 | 165 | 18 | 166 | NAC domain-containing protein 19 |
3swm_C | 3e-31 | 1 | 165 | 18 | 166 | NAC domain-containing protein 19 |
3swm_D | 3e-31 | 1 | 165 | 18 | 166 | NAC domain-containing protein 19 |
3swp_A | 3e-31 | 1 | 165 | 18 | 166 | NAC domain-containing protein 19 |
3swp_B | 3e-31 | 1 | 165 | 18 | 166 | NAC domain-containing protein 19 |
3swp_C | 3e-31 | 1 | 165 | 18 | 166 | NAC domain-containing protein 19 |
3swp_D | 3e-31 | 1 | 165 | 18 | 166 | NAC domain-containing protein 19 |
4dul_A | 3e-31 | 1 | 165 | 15 | 163 | NAC domain-containing protein 19 |
4dul_B | 3e-31 | 1 | 165 | 15 | 163 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010034219.1 | 1e-158 | PREDICTED: NAC domain-containing protein 90 | ||||
Swissprot | Q9FMR3 | 8e-94 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A059AAV3 | 1e-178 | A0A059AAV3_EUCGR; Uncharacterized protein | ||||
STRING | XP_010034219.1 | 1e-157 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1445 | 28 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G22380.1 | 3e-90 | NAC domain containing protein 90 |
Publications ? help Back to Top | |||
---|---|---|---|
|