PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC045148.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 207aa    MW: 24335.7 Da    PI: 9.9115
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC045148.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.81.1e-171158148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd ll  +v+++G g W++++++ g++R++k+c++rw++yl
     EcC045148.20 11 KGSWTEEEDVLLRSCVQRYGEGEWHRVPQRAGLNRCRKSCRLRWLNYL 58
                     799*******************************************97 PP
2Myb_DNA-binding46.96.3e-1564109148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++  +E + +++++k+lG++ W++Ia +++ gRt++++k++w+++l
     EcC045148.20  64 RGKFQDDEVDMIIRLHKLLGNR-WSLIAGRLP-GRTANDVKNYWNTHL 109
                      8999******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.562662IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.3E-22860IPR009057Homeodomain-like
SuperFamilySSF466895.14E-288105IPR009057Homeodomain-like
SMARTSM007171.2E-141060IPR001005SANT/Myb domain
PfamPF002496.2E-171158IPR001005SANT/Myb domain
CDDcd001679.07E-101358No hitNo description
Gene3DG3DSA:1.10.10.609.2E-2461112IPR009057Homeodomain-like
SMARTSM007173.1E-1463111IPR001005SANT/Myb domain
PROSITE profilePS5129419.49963113IPR017930Myb domain
PfamPF002491.6E-1364109IPR001005SANT/Myb domain
CDDcd001675.73E-969109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009753Biological Processresponse to jasmonic acid
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MQKGSSFGLR KGSWTEEEDV LLRSCVQRYG EGEWHRVPQR AGLNRCRKSC RLRWLNYLKP  60
NIKRGKFQDD EVDMIIRLHK LLGNRWSLIA GRLPGRTAND VKNYWNTHLR KLMTCQGKPE  120
NEKPQELVKV EVIRPRPRTI SKNFSSLGVE AYRELNKSRE PRVHDVPPNR SPWIDDDFQL  180
RSETTEAWLD CWSGLSFDAD SIWDWAG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-2291115106B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00213DAPTransfer from AT1G66370Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010034474.11e-148PREDICTED: transcription factor MYB114
RefseqXP_010034481.11e-148PREDICTED: transcription factor MYB114 isoform X2
SwissprotQ9FNV93e-63MY113_ARATH; Transcription factor MYB113
TrEMBLA0A059AE651e-147A0A059AE65_EUCGR; Uncharacterized protein
TrEMBLA0A059AEG21e-147A0A059AEG2_EUCGR; Uncharacterized protein
STRINGXP_010034474.11e-147(Eucalyptus grandis)
STRINGXP_010034481.11e-147(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.11e-65myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]