PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC045129.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | G2-like | ||||||||
Protein Properties | Length: 142aa MW: 16007.5 Da PI: 10.4654 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 106.9 | 1.1e-33 | 67 | 120 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH++F++aveqLGG++kAtPk +l++m+vkgLt++hvkSHLQ+YR+ EcC045129.10 67 PRLRWTPDLHQCFMHAVEQLGGEDKATPKMVLQMMSVKGLTISHVKSHLQMYRS 120 9****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.596 | 63 | 123 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-32 | 63 | 122 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.96E-17 | 64 | 121 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.0E-25 | 67 | 121 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 6.4E-9 | 68 | 119 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 142 aa Download sequence Send to blast |
MVHGEESSLK KSNSPSSSVV NVDGPSSESS NLRGDRKRGN EMLALLPLGT ISRRPSVVRP 60 YVRSKTPRLR WTPDLHQCFM HAVEQLGGED KATPKMVLQM MSVKGLTISH VKSHLQMYRS 120 MKHEQIMQGH LYNSTTFLCI FL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-20 | 68 | 123 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-20 | 68 | 123 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-20 | 68 | 123 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-20 | 68 | 123 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-20 | 68 | 123 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-20 | 68 | 123 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-20 | 68 | 123 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-20 | 68 | 123 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00301 | DAP | Transfer from AT2G40260 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018728305.1 | 4e-87 | PREDICTED: uncharacterized protein LOC108959263 isoform X1 | ||||
Refseq | XP_018728306.1 | 4e-87 | PREDICTED: uncharacterized protein LOC108959263 isoform X2 | ||||
TrEMBL | A0A059CF66 | 2e-68 | A0A059CF66_EUCGR; Uncharacterized protein | ||||
STRING | VIT_00s1624g00010.t01 | 4e-46 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM363 | 28 | 184 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40260.1 | 4e-29 | G2-like family protein |