PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC045068.20 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | HSF | ||||||||
Protein Properties | Length: 223aa MW: 25212.3 Da PI: 8.4984 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 105.5 | 4.2e-33 | 11 | 102 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 F+ k++++++d++++ l++w + +nsf+v+d+ ef+ ++Lp yFkh nf+SFvRQLn+YgFkkv+ ++ weF++++F +g+++ll++i EcC045068.20 11 FVAKTHHMVDDPATDVLVRWGRANNSFIVTDPLEFSLRILPAYFKHGNFSSFVRQLNTYGFKKVDPDK---------WEFANEYFLRGQTHLLSSIA 98 9********************999*****************************************999.........******************** PP XXXX CS HSF_DNA-bind 99 rkks 102 r+k+ EcC045068.20 99 RRKH 102 *997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.5E-35 | 5 | 94 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.0E-51 | 7 | 100 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 1.28E-32 | 8 | 100 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 9.2E-17 | 11 | 34 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 6.0E-29 | 11 | 100 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 9.2E-17 | 49 | 61 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 50 | 74 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 9.2E-17 | 62 | 74 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007018 | Biological Process | microtubule-based movement | ||||
GO:0016049 | Biological Process | cell growth | ||||
GO:1903338 | Biological Process | regulation of cell wall organization or biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0003777 | Molecular Function | microtubule motor activity | ||||
GO:0005524 | Molecular Function | ATP binding | ||||
GO:0008017 | Molecular Function | microtubule binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MEGGDDAVAP FVAKTHHMVD DPATDVLVRW GRANNSFIVT DPLEFSLRIL PAYFKHGNFS 60 SFVRQLNTYG FKKVDPDKWE FANEYFLRGQ THLLSSIARR KHNPRNAAHP QSGNSSGGDG 120 EDEDVAMEIS RLRQEQKTLE QELQGMSKRL EATERRPHQM MEFLHKAVED PQLILRMMLE 180 KDRTRQLMCE KKRSFLKSSS SSSSNLSSSP STSSSLPPSA SPS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 7e-22 | 3 | 100 | 12 | 120 | Heat shock factor protein 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018727114.1 | 1e-161 | PREDICTED: heat stress transcription factor C-1-like | ||||
Swissprot | Q9LV52 | 5e-81 | HSFC1_ARATH; Heat stress transcription factor C-1 | ||||
TrEMBL | A0A0M4GX43 | 5e-94 | A0A0M4GX43_GOSHI; HSF31 | ||||
STRING | XP_010049697.1 | 1e-161 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24520.1 | 1e-77 | heat shock transcription factor C1 |
Publications ? help Back to Top | |||
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