PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC043707.40
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 357aa    MW: 41227.4 Da    PI: 9.7457
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC043707.40genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3521.2e-16191102100
                   EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
            B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                   fk+   sd+l+sg l++pk+f++++g     +  l l+      W v+l  +k+++r++++kGWk+F +   ++ g  +vFk+++ s f  +v +f+
  EcC043707.40  19 FKII-LSDSLQSGKLMIPKRFIAKYGDR--LPNLLLLKVAGDANWPVEL--EKCDDRVWISKGWKNFLDYYSINHGHLIVFKYEWGSIF--HVLIFD 108
                   4444.5999****************866..788899999999*******..**********************************9999..****99 PP

                   SS CS
            B3  99 ks 100
                   ks
  EcC043707.40 109 KS 110
                   85 PP
2B347.24e-15261355499
                   E-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
            B3   4 vltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                   +l+++++l+++++ +p+ f+++    +++  e  ++tl   +grsW+vk+   ++++     +++GW  F+ +n L +gD++vF+l++++   ++v+
  EcC043707.40 261 ILVRHYYLEHSNVHVPNGFMKSQirkSLV-VE--DVTL-EFRGRSWTVKF--FNYPNYycGKFSAGWAIFATDNSLSTGDVCVFELIKKTPMVFKVS 351
                   688999**************887543222.22..3443.3588*******..4444441123789*********************97766666999 PP

                   EE-S CS
            B3  96 vfrk 99 
                   +fr+
  EcC043707.40 352 IFRH 355
                   9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.08E-2314110IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.0E-2314110IPR015300DNA-binding pseudobarrel domain
CDDcd100173.71E-1716108No hitNo description
PROSITE profilePS5086312.36517110IPR003340B3 DNA binding domain
SMARTSM010195.6E-1718110IPR003340B3 DNA binding domain
PfamPF023624.3E-1319109IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.3E-17251355IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-14252355IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.675258356IPR003340B3 DNA binding domain
SMARTSM010191.9E-9259356IPR003340B3 DNA binding domain
CDDcd100173.05E-15259354No hitNo description
PfamPF023623.7E-12260355IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MNVSHPRQRY KPLETPHFFK IILSDSLQSG KLMIPKRFIA KYGDRLPNLL LLKVAGDANW  60
PVELEKCDDR VWISKGWKNF LDYYSINHGH LIVFKYEWGS IFHVLIFDKS ASEIEYPPKP  120
IAPEKLAEPK VVEADDVSTE LGEYISPGER REMKSPSCLA SSDKLMTKSD PVSQDRNKSC  180
ARLPMPYYEA KGSYSGDRRT SKLKEYLHPY RSSLDYSGKV KESEKRATPF EQIHLRSRCT  240
NPSDALKKAR KFKSEHPSFL ILVRHYYLEH SNVHVPNGFM KSQIRKSLVV EDVTLEFRGR  300
SWTVKFFNYP NYYCGKFSAG WAIFATDNSL STGDVCVFEL IKKTPMVFKV SIFRHAG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018718145.10.0PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLA0A059AKX07e-91A0A059AKX0_EUCGR; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.19e-38B3 family protein