PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC043669.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | ERF | ||||||||
Protein Properties | Length: 331aa MW: 35053 Da PI: 6.7912 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66.7 | 4.4e-21 | 117 | 167 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr+++ +g+W+AeIrdp++ +r++lg+fgtaeeAa +++a+ +l+g EcC043669.10 117 KKFRGVRQRP-WGKWAAEIRDPKK---GTRVWLGTFGTAEEAALVYDNAAIQLRG 167 59********.**********954...4*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.26E-32 | 117 | 174 | No hit | No description |
SMART | SM00380 | 1.4E-39 | 118 | 181 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.2E-30 | 118 | 175 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-22 | 118 | 175 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 5.2E-14 | 118 | 167 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.406 | 118 | 175 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-10 | 119 | 130 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-10 | 141 | 157 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042991 | Biological Process | transcription factor import into nucleus | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MMPPVKFTEH CTHTTLVRPD HHLNSPKTRP EMNPKVLRIS YTDGDATDSS SDEEAELLPR 60 RRVKKFVHEI ALQSDGGDGN AGSGRAKAKR RKPSGNPGTP VSGGDLKASA GCCGGGKKFR 120 GVRQRPWGKW AAEIRDPKKG TRVWLGTFGT AEEAALVYDN AAIQLRGPDA LTNFSTPPAE 180 SMPPPPPPPP RPKNGVVPPL PPTAAAATAS SSSSVSGEGS SRRASSPTSV LRGVSGEEAD 240 SPMGEAAKES CVSENFPQPS ARSALDLYLP AETFDFQSSR SDLSGSFSGL YTGDDLLANL 300 GDDLGAGFGS PDWTFYDHVR DVGDILRLDP M |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-22 | 116 | 174 | 3 | 62 | ATERF1 |
3gcc_A | 3e-22 | 116 | 174 | 3 | 62 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00027 | PBM | Transfer from AT4G23750 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010055834.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor CRF2 | ||||
TrEMBL | A0A059C2B4 | 0.0 | A0A059C2B4_EUCGR; Uncharacterized protein | ||||
STRING | XP_010055834.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 9e-48 | cytokinin response factor 4 |