PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC043498.50
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 351aa    MW: 40142 Da    PI: 9.7835
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC043498.50genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.52.8e-14381131899
                   --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
            B3  18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                   +pkkf+++hg++   s  + l+ ++g+ W v+l  ++++gr++l+kGW +Fv+   +  g  ++F+++++s f   v +f++
  EcC043498.50  38 MPKKFLQKHGND--LSSLVFLKVPNGEIWPVQL--ERNDGRVLLGKGWLKFVDYYSIVPGQLILFRYEWNSIF--QVVIFDT 113
                   7********988..7779***************..**********************************9999..8888876 PP
2B343.75.1e-142533483100
                   EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
            B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                    ++++++ l+ + + +p  f+++h +k+++ +tl+ ++   rsW+vkl   k+s+r     +++GW +F+++  L+ gD +vF+l+++++  + v++
  EcC043498.50 253 VIEMSPSCLRYCSVNVPAGFMRSHISKSPQFVTLKYMN---RSWSVKL--FKHSERygsGRFSGGWLRFARETFLRRGDACVFELVEKNRVVFEVSI 344
                   5677899999**************77766766666555...9999999..5555552224688**********************988888889999 PP

                   E-SS CS
            B3  97 frks 100
                   fr+s
  EcC043498.50 345 FRRS 348
                   9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.2821114IPR003340B3 DNA binding domain
SMARTSM010191.5E-731114IPR003340B3 DNA binding domain
SuperFamilySSF1019367.26E-1935114IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.3E-1936114IPR015300DNA-binding pseudobarrel domain
CDDcd100176.20E-1338112No hitNo description
PfamPF023621.3E-1138113IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.7E-20245348IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.63E-18249348IPR015300DNA-binding pseudobarrel domain
CDDcd100175.07E-16250346No hitNo description
PROSITE profilePS5086312.182251348IPR003340B3 DNA binding domain
SMARTSM010197.0E-13252348IPR003340B3 DNA binding domain
PfamPF023623.2E-11253347IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009095Biological Processaromatic amino acid family biosynthetic process, prephenate pathway
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009570Cellular Componentchloroplast stroma
GO:0003677Molecular FunctionDNA binding
GO:0004069Molecular FunctionL-aspartate:2-oxoglutarate aminotransferase activity
GO:0005515Molecular Functionprotein binding
GO:0030170Molecular Functionpyridoxal phosphate binding
GO:0033853Molecular Functionaspartate-prephenate aminotransferase activity
GO:0033854Molecular Functionglutamate-prephenate aminotransferase activity
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MLSSDALPDG KPEYVRVPDA FNLFPPPVTK FEVFEQGMPK KFLQKHGNDL SSLVFLKVPN  60
GEIWPVQLER NDGRVLLGKG WLKFVDYYSI VPGQLILFRY EWNSIFQVVI FDTSSLEIEY  120
PAICPKSKAE YEFPLPKKEE TDDISVKISE ECWPSQITSE KAKWASGEAS LGLAGEDTNN  180
SHKHLICTRS RSRGREFSSS KKNKPLICSS KNHEGVTRNS ERIASSVFYG SKGLSPPALK  240
MARKFRSVYP TFVIEMSPSC LRYCSVNVPA GFMRSHISKS PQFVTLKYMN RSWSVKLFKH  300
SERYGSGRFS GGWLRFARET FLRRGDACVF ELVEKNRVVF EVSIFRRSDY T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A1e-1223835135146B3 domain-containing transcription factor VRN1
4i1k_B1e-1223835135146B3 domain-containing transcription factor VRN1
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-36B3 family protein