PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC043273.40 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | NAC | ||||||||
Protein Properties | Length: 377aa MW: 42878.6 Da PI: 5.2039 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 97.2 | 2.4e-30 | 52 | 194 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........tksg 81 lp+G++F+P+d el+ e+L++k+ + + ++e+i++++ i++++P++Lp v+++ ++++fF+++ ++yatgkrk+r+ ++ EcC043273.40 52 LPAGVKFDPSDGELL-EHLAAKCGIGNsrqhMLIDEFIPTLEwnegICYTHPENLP-GVNKDGRSVHFFHRTMNAYATGKRKRRKihdqhnlnREDV 146 799************.999999877664554333445655534455**********.6778899********************8677777665599 PP NAM 82 yWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +W++tgk+k+v +g ++g +k++v+y +++ +k++k++Wvmh+y+l EcC043273.40 147 RWHKTGKTKPVAI-DGVHIGWQKIMVLYksSKKGSKATKSNWVMHQYHL 194 9************.99************4434777889*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.98E-35 | 37 | 213 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 30.003 | 52 | 213 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-12 | 53 | 194 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006468 | Biological Process | protein phosphorylation | ||||
GO:0006487 | Biological Process | protein N-linked glycosylation | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003830 | Molecular Function | beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity | ||||
GO:0004672 | Molecular Function | protein kinase activity | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 377 aa Download sequence Send to blast |
SWLVDGRSIA KKVKNATLST SCQIKDCGAN RECPNCHYFI DNTDVSPEWP GLPAGVKFDP 60 SDGELLEHLA AKCGIGNSRQ HMLIDEFIPT LEWNEGICYT HPENLPGVNK DGRSVHFFHR 120 TMNAYATGKR KRRKIHDQHN LNREDVRWHK TGKTKPVAID GVHIGWQKIM VLYKSSKKGS 180 KATKSNWVMH QYHLGADKEE KDGEYVVSKI FYQQPKETEK NNNNNKENNE SMDIDYQDVK 240 TLQTNPRTPK PNRLNPHQTE KFGLLDDVAE GDMKSSDQDI YKDIQLEDDE LYPEWLAGES 300 QPLEDFDFGY IDGLLFHEEP SGSHSPSNDR GCDLVPPTSL PEINEVVNEV VTDENATYGI 360 SELAKLDFDT PPDFLHP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 128 | 133 | KRKRRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010033337.1 | 0.0 | PREDICTED: NAC domain-containing protein 8 isoform X1 | ||||
Refseq | XP_010033338.1 | 0.0 | PREDICTED: NAC domain-containing protein 8 isoform X2 | ||||
Swissprot | Q6NQK2 | 5e-85 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A059AGU7 | 0.0 | A0A059AGU7_EUCGR; Uncharacterized protein | ||||
STRING | XP_010033337.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5045 | 26 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01600.1 | 7e-86 | NAC domain containing protein 44 |