PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC043112.50 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 87aa MW: 9719.27 Da PI: 11.2949 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 48.8 | 8.7e-16 | 13 | 49 | 5 | 41 |
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41 n + r + + kR+ g++KKA E SvLC+++ +v++f EcC043112.50 13 NARARRIAYEKRKDGLMKKAREFSVLCGVDTCVVVFP 49 78899******************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 1.02E-17 | 1 | 82 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 16.946 | 1 | 48 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.3E-11 | 1 | 67 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 4.41E-17 | 2 | 87 | No hit | No description |
PRINTS | PR00404 | 5.2E-7 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.7E-16 | 13 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.2E-7 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 87 aa Download sequence Send to blast |
MGRGKTPHGL VPNARARRIA YEKRKDGLMK KAREFSVLCG VDTCVVVFPE AAAAGGDRPT 60 APEVWPPDSR EARRIIERYR SAGRRKK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010023474.1 | 7e-53 | PREDICTED: MADS-box transcription factor 4 | ||||
TrEMBL | A0A059B0V5 | 2e-51 | A0A059B0V5_EUCGR; Uncharacterized protein | ||||
STRING | XP_010023474.1 | 3e-52 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G55690.1 | 5e-19 | M-type_MADS family protein |