PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC042934.20

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

Dof

Protein Properties

Length: 412aa MW: 44809.9 Da PI: 6.9545

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC042934.20	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.3	9.6e-40	61	121	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+++cprC+s++tkfCyynny+++qPr+fCkaC+ryWt+GG++rnvPvG+grrk+k+s EcC042934.20 61 PDKIIPCPRCNSMDTKFCYYNNYNVNQPRHFCKACQRYWTAGGTMRNVPVGAGRRKSKSSA 121 7899*****************************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	2.1E-32	63	119	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.593	65	119	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	67	103	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	1.0E-23	69	118	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0016788	Molecular Function	hydrolase activity, acting on ester bonds

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence Send to blast
CHSIEHFAME VQEDDDQVSP ETVNPKTPSI EEESAKTKAS GIDQEQGDSS NSQEKPPLKK 60 PDKIIPCPRC NSMDTKFCYY NNYNVNQPRH FCKACQRYWT AGGTMRNVPV GAGRRKSKSS 120 ASQYRQITLS EALQAARIDA PNGTHLPNGK INGTVLTFGL DPSAGDSMAV ALNLSNKEGS 180 AMNRMQNGFC DFGRNGVSVP QRSGEKNDDC SSRSSVAISN LTDEGNGNSN LEGSSANGFH 240 PQFPCYPGIP QPYPWNPAML PPPFYPSGFA VPIYPAPLWN CGLHSSWNFP LLSPPSQKGS 300 NSGPDSPTLG KHAREGEMVE KVDSEEDEPR KRKNGCVLVP KTLRIDDPSE AAKSTIWATL 360 GIKKDWLGKD GLFQGFQSKG EEKNHVSETA SVLCANPAAL SRSIKFHESS CV

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence Send to blast

CHSIEHFAME VQEDDDQVSP ETVNPKTPSI EEESAKTKAS GIDQEQGDSS NSQEKPPLKK  60
PDKIIPCPRC NSMDTKFCYY NNYNVNQPRH FCKACQRYWT AGGTMRNVPV GAGRRKSKSS  120
ASQYRQITLS EALQAARIDA PNGTHLPNGK INGTVLTFGL DPSAGDSMAV ALNLSNKEGS  180
AMNRMQNGFC DFGRNGVSVP QRSGEKNDDC SSRSSVAISN LTDEGNGNSN LEGSSANGFH  240
PQFPCYPGIP QPYPWNPAML PPPFYPSGFA VPIYPAPLWN CGLHSSWNFP LLSPPSQKGS  300
NSGPDSPTLG KHAREGEMVE KVDSEEDEPR KRKNGCVLVP KTLRIDDPSE AAKSTIWATL  360
GIKKDWLGKD GLFQGFQSKG EEKNHVSETA SVLCANPAAL SRSIKFHESS CV

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269\|PubMed:19619493}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00394	DAP	Transfer from AT3G47500	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. {ECO:0000269\|PubMed:19619493}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010029927.1	0.0	PREDICTED: cyclic dof factor 3
Swissprot	Q8LFV3	2e-97	CDF3_ARATH; Cyclic dof factor 3
TrEMBL	A0A059D075	0.0	A0A059D075_EUCGR; Uncharacterized protein
STRING	XP_010029927.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5441	28	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	1e-90	cycling DOF factor 3

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Corrales AR, et al. Multifaceted role of cycling DOF factor 3 (CDF3) in the regulation of flowering time and abiotic stress responses in Arabidopsis. Plant Cell Environ., 2017. 40(5): p. 748-764 [PMID:28044345] Renau-Morata B, et al. Ectopic Expression of CDF3 Genes in Tomato Enhances Biomass Production and Yield under Salinity Stress Conditions. Front Plant Sci, 2017. 8: p. 660 [PMID:28515731] Henriques R, et al. The antiphasic regulatory module comprising CDF5 and its antisense RNA FLORE links the circadian clock to photoperiodic flowering. New Phytol., 2017. 216(3): p. 854-867 [PMID:28758689]