PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC042796.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family AP2
Protein Properties Length: 318aa    MW: 35077.2 Da    PI: 9.7689
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC042796.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.64.7e-113692155
           AP2  1 sgykGVrwdkkrgrWvAeIrd.pseng...krkrfslgkfgtaeeAakaaiaarkkleg 55
                  s y+GV++++++gr++A+++d  +       rk  + g ++ +++Aa+a++ a++k++g
  EcC042796.20 36 SIYRGVTRHRWTGRYEAHLWDnSCR-RegqARKGRQ-GGYDKEDKAARAYDLAALKYWG 92
                  57*******************4444.2344336655.7799999*************98 PP
2AP251.13.3e-16135186155
           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  EcC042796.20 135 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 186
                   57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.55E-1836102No hitNo description
SuperFamilySSF541715.23E-1536102IPR016177DNA-binding domain
PfamPF008478.7E-93692IPR001471AP2/ERF domain
PROSITE profilePS5103217.34637100IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-1237101IPR001471AP2/ERF domain
SMARTSM003805.1E-2237106IPR001471AP2/ERF domain
PRINTSPR003671.5E-63849IPR001471AP2/ERF domain
CDDcd000183.49E-11135194No hitNo description
SuperFamilySSF541713.53E-18135195IPR016177DNA-binding domain
PfamPF008471.4E-10135186IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-18136194IPR001471AP2/ERF domain
SMARTSM003807.3E-31136200IPR001471AP2/ERF domain
PROSITE profilePS5103219.177136194IPR001471AP2/ERF domain
PRINTSPR003671.5E-6176196IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010091Biological Processtrichome branching
GO:0046777Biological Processprotein autophosphorylation
GO:0050832Biological Processdefense response to fungus
GO:0005654Cellular Componentnucleoplasm
GO:0071944Cellular Componentcell periphery
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004674Molecular Functionprotein serine/threonine kinase activity
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
AAASQPQSTE KATVAVTAAD SDGSKKINDS FGQRTSIYRG VTRHRWTGRY EAHLWDNSCR  60
REGQARKGRQ GGYDKEDKAA RAYDLAALKY WGPTATTNFP VSNYAKELEE MKHVTKQEFI  120
ASLRRKSSGF SRGASIYRGV TRHHQQGRWQ ARIGRVAGNK DLYLGTFATE EEAAEAYDIA  180
AIKFRGLNAV TNFEMNRYDV EAIANSTLPI GGAAKRLKLN LEAEQKPCLD MIHQQPTPRT  240
GGGNISFSAI QPFPTIPCGI PFDTSTALYN PNFFHHLQPN IGSSTIANSP SSTSTIPTPA  300
VTAVPQTADF FIWPHQSY
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010027962.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL6
SwissprotQ52QU21e-134AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A059AKU20.0A0A059AKU2_EUCGR; Uncharacterized protein
STRINGXP_010027962.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.21e-131AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]