PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC042588.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C3H
Protein Properties Length: 398aa    MW: 44588 Da    PI: 7.8169
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC042588.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.11.4e-08136156526
                   --SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                    C  ++r G C++Gd+C FaHg
  EcC042588.10 136 VCAEYRR-GSCSRGDNCEFAHG 156
                   799999*.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902295.49E-5130160IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-5131157IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.9E-6132158IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.906132158IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-6136156IPR000571Zinc finger, CCCH-type
SMARTSM003562.6166189IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.24166190IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010187Biological Processnegative regulation of seed germination
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MTSVCAEQHK FHASHQLFSP KKALDIPSRK LLGRRTASSV AQHQSAALES HDVFSSDYSP  60
RVPETPLQKF LPFNNGVDDE DEDSDPYSSD HFRMFEFKVR RCTRSRSHDW TDCPFAHPGE  120
KARRRDPRKY HYSGTVCAEY RRGSCSRGDN CEFAHGVFEC WLHPSKYRTE ACKDGKNCKR  180
KVCFFAHSTR QLRLLPAQSE PNSPQEINLE KSKFHSPVSP SSLPHCCLFC HSFTASSPTS  240
TLLGMSHLSP PLSPSQSLSP PLSPLKGRSL SGFSPISRYA DRLESSCLSQ GMSYKDVLNE  300
IMTSLDVMKM SEVSPPPHSS PLSSVKNRTA MPWVDVTTSV NEEQTQFILS PSTPNYPQVP  360
KNFFGSDPSS KEGIFADKVN EGNSCNDPDI GWVNELLM
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010070036.10.0PREDICTED: zinc finger CCCH domain-containing protein 2
TrEMBLA0A059DH660.0A0A059DH66_EUCGR; Uncharacterized protein
STRINGXP_010070036.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29872766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.13e-79C3H family protein