PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC042463.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | NAC | ||||||||
Protein Properties | Length: 194aa MW: 22945.8 Da PI: 8.3312 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 129.8 | 2.1e-40 | 10 | 140 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk........kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lp+G+rFhPtdee v++yLk++v+g + +i++vdi++++Pw+Lp+ +++ + +ew+fF+++ ++ +r+t sgyWk+tg+d EcC042463.10 10 LPVGYRFHPTDEEYVDYYLKNRVRGFIDHP-CIIPDVDICRWDPWELPQkfhgesiiRLDDKVQEWWFFCPQTP-----QQVKRSTPSGYWKKTGTD 100 799*********************988555.58***************6477777665555778*******866.....5789************** PP NAM 90 kevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++v+++ +++++g kktLvf++gr ++g+kt+Wv+hey+l EcC042463.10 101 RNVKARdTNRVIGSKKTLVFHTGRGSRGVKTNWVIHEYHL 140 ****9977788***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.14E-45 | 7 | 157 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 45.955 | 10 | 157 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.9E-25 | 11 | 140 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MGNVIIPNNL PVGYRFHPTD EEYVDYYLKN RVRGFIDHPC IIPDVDICRW DPWELPQKFH 60 GESIIRLDDK VQEWWFFCPQ TPQQVKRSTP SGYWKKTGTD RNVKARDTNR VIGSKKTLVF 120 HTGRGSRGVK TNWVIHEYHL PANELNRNYV LCRLKHKRDE KADNSTKELE QGANIWAGWD 180 SDLRQPDHED SFHM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 6e-31 | 9 | 160 | 14 | 171 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010065925.1 | 1e-143 | PREDICTED: uncharacterized protein LOC104453109 isoform X1 | ||||
Refseq | XP_010065926.1 | 1e-143 | PREDICTED: uncharacterized protein LOC104453109 isoform X2 | ||||
TrEMBL | A0A059BC53 | 1e-103 | A0A059BC53_EUCGR; Uncharacterized protein | ||||
STRING | XP_010065925.1 | 1e-142 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM20677 | 2 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35580.1 | 5e-44 | NAC transcription factor-like 9 |