PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC042108.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | C2H2 | ||||||||
Protein Properties | Length: 98aa MW: 11259.4 Da PI: 9.4744 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.6 | 0.00041 | 65 | 80 | 6 | 21 |
TTEEESSHHHHHHHHH CS zf-C2H2 6 CgksFsrksnLkrHir 21 C+ sFs++++L +Hi EcC042108.10 65 CTLSFSNWMMLCTHIL 80 **************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.20.20.100 | 6.1E-18 | 1 | 62 | IPR023210 | NADP-dependent oxidoreductase domain |
SuperFamily | SSF51430 | 1.31E-13 | 2 | 67 | IPR023210 | NADP-dependent oxidoreductase domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 98 aa Download sequence Send to blast |
MNPMWQQQKL RKFCKEKGIH ITAYSPLGAK GTFWGTNRVM ECEVLEEIAK AKGKTHGQVV 60 INLLCTLSFS NWMMLCTHIL IRMINLDTWS SQVKILCS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3h7u_A | 2e-13 | 2 | 61 | 204 | 263 | Aldo-keto reductase |
5jh1_A | 2e-13 | 2 | 61 | 179 | 238 | Aldose reductase, AKR4C7 |
5jh2_A | 2e-13 | 2 | 61 | 180 | 239 | Aldose reductase, AKR4C7 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Catalyzes the reduction of a 3''-keto intermediate during the biosynthesis of 2'-deoxymugineic acid (DMA) from L-Met. Involved in the formation of phytosiderophores (MAs) belonging to the mugineic acid family and required to acquire iron. {ECO:0000269|PubMed:16926158}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated under iron-deficient conditions in root tissues. {ECO:0000269|PubMed:16926158}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010043909.1 | 2e-34 | PREDICTED: non-functional NADPH-dependent codeinone reductase 2 | ||||
Swissprot | B4F9A4 | 3e-22 | DMAS1_MAIZE; Deoxymugineic acid synthase 1 | ||||
TrEMBL | A0A059D5V7 | 4e-33 | A0A059D5V7_EUCGR; Uncharacterized protein | ||||
STRING | XP_010043909.1 | 7e-34 | (Eucalyptus grandis) |
Publications ? help Back to Top | |||
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