PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC041751.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | B3 | ||||||||
Protein Properties | Length: 258aa MW: 28858.8 Da PI: 7.7968 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 31 | 4.6e-10 | 147 | 236 | 2 | 78 |
EEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTH.HHHHHHHT--TT- CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesg.rsWevkliyrkksgryvltkGW.keFvkangLkegD 78 +k+l++sd ++++rl +p+ ++++ k+ e+ ++++ de+ + ++ + y+ +sg+yvl+++W keFv+ gL egD EcC041751.10 147 KKTLKKSDLGQLSRLLIPRAAVATYvlpcmdeerarRVKSSEGAEVVVWDEDThSEHRLVFAYWASSGSYVLKGCWmKEFVQRRGLAEGD 236 6999************************99888877444457889999998776667777777*************668**********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51257 | 5 | 1 | 34 | No hit | No description |
SuperFamily | SSF101936 | 1.45E-12 | 144 | 245 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.86E-15 | 146 | 254 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 2.0E-13 | 147 | 243 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.2E-7 | 148 | 236 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MKLVDPFTLE LPPTGDVPRG ELHTLLPSIG SSSCVSFLHD HERNHKEEGR ETSSAAVVVP 60 ARVFFPLTPD PTRGYLDTKE RSAAPARPER KSKASLTDDG TLTVDKKAKR CRSQKGKRGA 120 SECEVEEERC GDVSTELVLR YDPYKIKKTL KKSDLGQLSR LLIPRAAVAT YVLPCMDEER 180 ARRVKSSEGA EVVVWDEDTH SEHRLVFAYW ASSGSYVLKG CWMKEFVQRR GLAEGDEIGI 240 CWDPIASKLD FSLLHKAN |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010041685.1 | 1e-177 | PREDICTED: putative B3 domain-containing protein At1g78640 | ||||
TrEMBL | A0A059C5C5 | 1e-159 | A0A059C5C5_EUCGR; Uncharacterized protein | ||||
STRING | XP_010041685.1 | 1e-177 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM456 | 9 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33720.1 | 4e-23 | B3 family protein |