PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC041716.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ARF
Protein Properties Length: 669aa    MW: 74727.3 Da    PI: 6.3507
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC041716.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3629.6e-20111221198
                   EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE............EEETTEEEE-TTHHHHHHHHT--TT-EE CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliy..........rkksgryvltkGWkeFvkangLkegDfv 80 
                   f+k+lt sd++++g +++ +++aee+       ++++ +  +l+ +d++g++W +++i+           ++++r++lt+GW+ Fv++++L +gD +
  EcC041716.20 111 FCKTLTASDTSTHGGFSVLRRHAEEClplldmtQQPPWQ--ELVATDLHGNEWHFRHIFrvhyadiafiVGQPRRHLLTTGWSVFVSSKKLIAGDAF 205
                   99****************************975544444..8***************999999*99999999************************* PP

                   EEEE-SSSEE..EEEEE- CS
            B3  81 vFkldgrsefelvvkvfr 98 
                   +F   + +++el+v+v+r
  EcC041716.20 206 IFL--RGEDGELRVGVRR 221
                   ***..4499*******97 PP
2Auxin_resp106.92.3e-35247329183
    Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                   a+ha++t++ F+v+Y+Pr+s+seF+v+++k+++a  +k+s+GmR+km+fe+e++serr+sGt++gv d+ ++ W+nS+WrsLk
  EcC041716.20 247 ASHAITTGTLFSVFYKPRTSRSEFIVSLNKYLEARAHKLSMGMRLKMKFEGEEVSERRFSGTIIGVGDSMSSGWTNSEWRSLK 329
                   789******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.92E-40101250IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.7E-39104236IPR015300DNA-binding pseudobarrel domain
CDDcd100179.52E-18109221No hitNo description
SMARTSM010196.1E-14111223IPR003340B3 DNA binding domain
PROSITE profilePS5086310.532111223IPR003340B3 DNA binding domain
PfamPF023627.4E-17111221IPR003340B3 DNA binding domain
PfamPF065072.1E-33247329IPR010525Auxin response factor
PfamPF023097.3E-6539582IPR033389AUX/IAA domain
SuperFamilySSF542778.44E-11546624No hitNo description
PROSITE profilePS5174526.293546639IPR000270PB1 domain
PfamPF023098.1E-6593636IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 669 aa     Download sequence    Send to blast
AFADALYKEL WHACAGPLVT LPREGERVYY FPQGHMEQLE ASTNRGLEQQ MPSFDLPSKI  60
LCRVVNIQLR AEPETDEVYS QITLLPEPEQ KEVTSPDPPL PEPPRCKVHS FCKTLTASDT  120
STHGGFSVLR RHAEECLPLL DMTQQPPWQE LVATDLHGNE WHFRHIFRVH YADIAFIVGQ  180
PRRHLLTTGW SVFVSSKKLI AGDAFIFLRG EDGELRVGVR RLMRQQSNMP SSVISSHSMH  240
LGVLATASHA ITTGTLFSVF YKPRTSRSEF IVSLNKYLEA RAHKLSMGMR LKMKFEGEEV  300
SERRFSGTII GVGDSMSSGW TNSEWRSLKV QWDEPSSILR PDRVSSWELE PLVVTAPSNS  360
QQVQRKRARP TVLPSSSVQE LSVFGGPKAP ENSSDFLHGD SQRGRDVYLS PKFSPSARSK  420
SLNYNGNGSP AALSGYTVNW PSHMETITDP CTPVNGKESS EKRESGGSGC RLFGVQLLDS  480
AKKESLSVTL AAGQRDNDKT ALSIDDDSKE HQEPSCVNHF DNPSACYDPE KSCPNSSQDL  540
QSRQIRTCIK VHMQGIAVGR AVNLAQFNRY EDLLMRFEEM FEIGGELCGS MRKWQVVYTD  600
DEDDMMMVGD DPWHEFCSMA KKIYIYTTEE VKRLLPKIKL PVEDVGPANG GSDVAVNTDD  660
RSSVVGSGC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A0.0135214355Auxin response factor 1
4ldw_A0.0135214355Auxin response factor 1
4ldw_B0.0135214355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Acts as repressor of IAA2, IAA3 and IAA7. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16176952}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00097PBMTransfer from AT1G59750Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010065238.10.0PREDICTED: auxin response factor 1 isoform X1
RefseqXP_010065239.10.0PREDICTED: auxin response factor 1 isoform X1
SwissprotQ8L7G00.0ARFA_ARATH; Auxin response factor 1
TrEMBLA0A059B9L60.0A0A059B9L6_EUCGR; Auxin response factor
STRINGXP_010065238.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM88252227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.30.0auxin response factor 1
Publications ? help Back to Top
  1. Montesinos JC,Pastor-Cantizano N,Robinson DG,Marcote MJ,Aniento F
    Arabidopsis p24δ5 and p24δ9 facilitate Coat Protein I-dependent transport of the K/HDEL receptor ERD2 from the Golgi to the endoplasmic reticulum.
    Plant J., 2014. 80(6): p. 1014-30
    [PMID:25312353]
  2. Marais C, et al.
    The Qb-SNARE Memb11 interacts specifically with Arf1 in the Golgi apparatus of Arabidopsis thaliana.
    J. Exp. Bot., 2015. 66(21): p. 6665-78
    [PMID:26208648]
  3. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  4. Zhang M,Hu X,Zhu M,Xu M,Wang L
    Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis.
    Sci Rep, 2017. 7(1): p. 1395
    [PMID:28469131]