PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC041450.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 312aa    MW: 34888.9 Da    PI: 7.9424
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC041450.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.52.7e-172976148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEde l+ +v++ G g+W+t +++ g+ R++k+c++rw +yl
     EcC041450.10 29 RGPWTPEEDEVLASYVRREGEGRWRTLPKRAGLQRCGKSCRLRWMNYL 76
                     89********************************************97 PP
2Myb_DNA-binding475.7e-1587127648
                      HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
     EcC041450.10  87 PDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 127
                      89***************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.5E-232078IPR009057Homeodomain-like
PROSITE profilePS5129416.7822476IPR017930Myb domain
SuperFamilySSF466894.77E-2926123IPR009057Homeodomain-like
SMARTSM007171.5E-112878IPR001005SANT/Myb domain
PfamPF002492.8E-152976IPR001005SANT/Myb domain
CDDcd001673.36E-103176No hitNo description
PROSITE profilePS5129424.39777131IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.1E-2479132IPR009057Homeodomain-like
SMARTSM007172.7E-1381129IPR001005SANT/Myb domain
CDDcd001671.00E-1187127No hitNo description
PfamPF002499.5E-1487127IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010090Biological Processtrichome morphogenesis
GO:0048354Biological Processmucilage biosynthetic process involved in seed coat development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MRYPAPASAS RGKSTSTATP CCSKVGIKRG PWTPEEDEVL ASYVRREGEG RWRTLPKRAG  60
LQRCGKSCRL RWMNYLRPSV KRGQIAPDEE DLILRLHRLL GNRWSLIAGR IPGRTDNEIK  120
NYWNTHLSKK LISQGIDPRT HKPLLNHNPS SSPAAHLQDT YNASTFTPKA TYPSPTVPVK  180
ETGDENDLKV ADSQLGQPQN AGVAQDHNNE NWQNVEGLTM MNSFGQNYAD HNCNNEDIFS  240
SFLDSLVEDE YTNQYHRGLT AAVPAQFVPG VSFTSAPSFN HGNITWELPG LRPEVESLGD  300
QQNAVLYNNH LP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-24291317108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010054687.10.0PREDICTED: transcription repressor MYB5
SwissprotQ388506e-80MYB5_ARATH; Transcription repressor MYB5
TrEMBLA0A059DGK70.0A0A059DGK7_EUCGR; Uncharacterized protein
STRINGXP_010054687.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.13e-82myb domain protein 5
Publications ? help Back to Top
  1. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]