PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC040635.70 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | GRAS | ||||||||
Protein Properties | Length: 539aa MW: 60551.5 Da PI: 4.7154 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 437.1 | 1.3e-133 | 170 | 539 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 ++lL++cA+a+s+g+ ++a+ ++ r+++++s +gdp qR+aay++e+Laar+ s++ lykal+++e + ss++laa+++++ev+P+++f++++a EcC040635.70 170 KQLLFDCATAISEGNIREASIIIDRVRQIVSIQGDPPQRIAAYMVEGLAARMGASGKFLYKALKCKEPP---SSDRLAAMQILFEVCPCFRFGFMAA 263 589*****************************************************************9...9************************ PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlelee 193 N aI ea+ ge+rvHi+DfdisqG Q+++Llq+Las p++ p lR+Tgv++pes+ l+++g+rL+k+Ae+l++pfef++ va+r+ +++ + EcC040635.70 264 NGAIIEAFRGEKRVHIVDFDISQGSQYITLLQTLASLPGQRPYLRLTGVDDPESVqrPIGGLKNIGQRLEKLAEALDIPFEFRA-VASRTPLVTPGM 359 *****************************************************99888899***********************.7*********** PP GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErell 290 L+++p+Eal+Vn+++qlh+++desvs+ +erd++L++vksl+Pk+v+vveq++++n+++Fl r+ ea +yysa+fdsl+a+lpres++r++vEr++l EcC040635.70 360 LDLQPREALVVNFAFQLHHMPDESVSTINERDQLLRMVKSLNPKLVTVVEQNVNTNTAPFLVRLGEAYSYYSAVFDSLDATLPRESQDRVNVERQCL 456 ************************************************************************************************* PP GRAS 291 greivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +r+i nvvaceg+er+er e ++kWr+r+++aGF + p+s+++++++ l+r+++++ y+++++ g+l +gW++++L+++SaWr EcC040635.70 457 ARDIINVVACEGEERIERYEVAGKWRARMMMAGFASCPMSKSVTESIINLIRQYSER-YKIKDDMGALHFGWEEKSLIVASAWR 539 *******************************************************66.*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 65.045 | 143 | 520 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.5E-131 | 170 | 539 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003824 | Molecular Function | catalytic activity | ||||
GO:0009055 | Molecular Function | electron carrier activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 539 aa Download sequence Send to blast |
MSLIRSTELS ATPYASSEML GSKKHQMMYV SETYSGEDYD PKYFIDSPSE ETINPSSYGM 60 SRNLYRTQGS SINTENPFST SESELMDGQS LDCVEYTEDK MRLKLQELER ALLDDGGDEE 120 EDNMYVDGQW VDQLQINSHD SPKESSSSDS NLSSISTNRE VSQPPSRTPK QLLFDCATAI 180 SEGNIREASI IIDRVRQIVS IQGDPPQRIA AYMVEGLAAR MGASGKFLYK ALKCKEPPSS 240 DRLAAMQILF EVCPCFRFGF MAANGAIIEA FRGEKRVHIV DFDISQGSQY ITLLQTLASL 300 PGQRPYLRLT GVDDPESVQR PIGGLKNIGQ RLEKLAEALD IPFEFRAVAS RTPLVTPGML 360 DLQPREALVV NFAFQLHHMP DESVSTINER DQLLRMVKSL NPKLVTVVEQ NVNTNTAPFL 420 VRLGEAYSYY SAVFDSLDAT LPRESQDRVN VERQCLARDI INVVACEGEE RIERYEVAGK 480 WRARMMMAGF ASCPMSKSVT ESIINLIRQY SERYKIKDDM GALHFGWEEK SLIVASAWR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 2e-62 | 176 | 538 | 26 | 378 | Protein SCARECROW |
5b3h_A | 2e-62 | 176 | 538 | 25 | 377 | Protein SCARECROW |
5b3h_D | 2e-62 | 176 | 538 | 25 | 377 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010063895.1 | 0.0 | PREDICTED: scarecrow-like protein 1 | ||||
Refseq | XP_010063896.1 | 0.0 | PREDICTED: scarecrow-like protein 1 | ||||
Refseq | XP_010063897.1 | 0.0 | PREDICTED: scarecrow-like protein 1 | ||||
Swissprot | Q9SDQ3 | 0.0 | SCL1_ARATH; Scarecrow-like protein 1 | ||||
TrEMBL | A0A059BYH6 | 0.0 | A0A059BYH6_EUCGR; Uncharacterized protein | ||||
STRING | XP_010063895.1 | 0.0 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21450.1 | 0.0 | SCARECROW-like 1 |
Publications ? help Back to Top | |||
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