PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC040550.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 539aa    MW: 60563.4 Da    PI: 4.7504
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC040550.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS439.81.9e-1341705392374
          GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                   ++lL++cA+a+s+g+ ++a+ +++r+++++s +gdp qR+aay++e+Laar+  s++ lykal+++e +   ss++laa+++++ev+P+++f++++a
  EcC040550.10 170 KQLLFDCATAISEGNIREASIIIERVRQIVSIQGDPPQRIAAYMVEGLAARMGASGKFLYKALKCKEPP---SSDRLAAMQILFEVCPCFRFGFMAA 263
                   589*****************************************************************9...9************************ PP

          GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlelee 193
                   N aI ea+ ge+rvHi+DfdisqG Q+++Llq+Las p++ p lR+Tgv++pes+      l+++g+rL+k+Ae+l++pfef++ va+r+  +++ +
  EcC040550.10 264 NGAIIEAFRGEKRVHIVDFDISQGSQYITLLQTLASLPGQRPYLRLTGVDDPESVqrPIGGLKNIGQRLEKLAEALDIPFEFRA-VASRTPLVTPGM 359
                   *****************************************************99888899***********************.7*********** PP

          GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErell 290
                   L+++p+Eal+Vn+++qlh+++desvs+ +erd++L++vksl+Pk+v+vveq++++n+++Fl rf ea +yysa+fdsl+a+lpres++r++vEr++l
  EcC040550.10 360 LDLQPREALVVNFAFQLHHMPDESVSTINERDQLLRMVKSLNPKLVTVVEQNVNTNTAPFLVRFGEAYSYYSAVFDSLDATLPRESQDRVNVERQCL 456
                   ************************************************************************************************* PP

          GRAS 291 greivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                   +r+i nvvaceg+er+er e ++kWr+r+++aGF + p+s+++++++  l+r+++++ y+++++ g+l +gW++++L+++SaWr
  EcC040550.10 457 ARDIINVVACEGEERIERYEVAGKWRARMMMAGFASCPMSKSVTESIINLIRQYSER-YKIKDDMGALHFGWEEKSLIVASAWR 539
                   *******************************************************66.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.557143520IPR005202Transcription factor GRAS
PfamPF035146.6E-132170539IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MSLIRSTELS ATPYASSEML GSKKHQMMYV SETYSGEDYD PKYFIDSPSE ETINPSSYGM  60
SRNLYHTQGS SINTENPFST SESELMDGQS PDCVEYTEDK MRLKLQELER ALLDDGGDQE  120
EDNMYVDGQW VDQLQINSHD SPKESSSSDS NLSSISTNRE VSQPPSRTPK QLLFDCATAI  180
SEGNIREASI IIERVRQIVS IQGDPPQRIA AYMVEGLAAR MGASGKFLYK ALKCKEPPSS  240
DRLAAMQILF EVCPCFRFGF MAANGAIIEA FRGEKRVHIV DFDISQGSQY ITLLQTLASL  300
PGQRPYLRLT GVDDPESVQR PIGGLKNIGQ RLEKLAEALD IPFEFRAVAS RTPLVTPGML  360
DLQPREALVV NFAFQLHHMP DESVSTINER DQLLRMVKSL NPKLVTVVEQ NVNTNTAPFL  420
VRFGEAYSYY SAVFDSLDAT LPRESQDRVN VERQCLARDI INVVACEGEE RIERYEVAGK  480
WRARMMMAGF ASCPMSKSVT ESIINLIRQY SERYKIKDDM GALHFGWEEK SLIVASAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-6317653826378Protein SCARECROW
5b3h_A2e-6317653825377Protein SCARECROW
5b3h_D2e-6317653825377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010063895.10.0PREDICTED: scarecrow-like protein 1
RefseqXP_010063896.10.0PREDICTED: scarecrow-like protein 1
RefseqXP_010063897.10.0PREDICTED: scarecrow-like protein 1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A059BYH60.0A0A059BYH6_EUCGR; Uncharacterized protein
STRINGXP_010063895.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69532744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]