PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC040443.20 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | C3H | ||||||||
Protein Properties | Length: 110aa MW: 11237.5 Da PI: 9.208 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 29.8 | 1e-09 | 2 | 26 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++C +fa G CkyG Ck++H++ EcC040443.20 2 VPNCTYFAIHGVCKYGRACKYNHPM 26 689********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 11.648 | 1 | 27 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.9E-7 | 2 | 26 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.07E-5 | 4 | 28 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006468 | Biological Process | protein phosphorylation | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0004672 | Molecular Function | protein kinase activity | ||||
GO:0005524 | Molecular Function | ATP binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 110 aa Download sequence Send to blast |
GVPNCTYFAI HGVCKYGRAC KYNHPMGMLS YSPSASSLAD MPVAPYPVGS SIGTLAPSSS 60 SSELRPDLIS GSLREASSTR SSSSTSASSA SIGSVLSKSE NASHSKSQKS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010037077.1 | 8e-66 | PREDICTED: zinc finger CCCH domain-containing protein 34 isoform X1 | ||||
Swissprot | Q5NAW2 | 1e-26 | C3H6_ORYSJ; Zinc finger CCCH domain-containing protein 6 | ||||
TrEMBL | A0A059D223 | 2e-64 | A0A059D223_EUCGR; Uncharacterized protein | ||||
STRING | XP_010037077.1 | 3e-65 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.2 | 3e-18 | C3H family protein |
Publications ? help Back to Top | |||
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