PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC040443.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C3H
Protein Properties Length: 319aa    MW: 34841.5 Da    PI: 9.0519
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC040443.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.21.2e-124571127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                  ++++ C +++rtG+C yG+rC+F+H+p
  EcC040443.10 45 PGEADCIYYLRTGFCGYGSRCRFNHPP 71
                  57899********************97 PP
2zf-CCCH40.73.9e-1393117327
                   S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                   ++ C++++rtG Ck+G +CkF+H++
  EcC040443.10  93 QPVCQYYMRTGMCKFGVSCKFHHPK 117
                   789********************96 PP
3zf-CCCH38.52e-12137163127
                   --S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                   +++++C+++ +tG+CkyG++CkF+H++
  EcC040443.10 137 PGERECSYYIKTGQCKYGATCKFHHPQ 163
                   5789*********************97 PP
4zf-CCCH41.62e-13274298226
                   -S---SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                   ++++C++++rtG+CkyG++C+++H+
  EcC040443.10 274 DQPECQYYMRTGYCKYGSSCRYHHP 298
                   689*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.544472IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-64471IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-104671IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-64872IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.0E-65070IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.02890118IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-790117IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.94E-791118IPR000571Zinc finger, CCCH-type
PfamPF006428.0E-1093117IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-595116IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.849136164IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-5136163IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-9138163IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-6139164IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.5E-5142162IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.549272300IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-6272299IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-11274298IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-7275300IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-6278298IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006468Biological Processprotein phosphorylation
GO:0005886Cellular Componentplasma membrane
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
GDRGVGGRAG NANRELVRFF CFRGVFAEHV WRLDLGGAKS YPLRPGEADC IYYLRTGFCG  60
YGSRCRFNHP PDRSSVLGAA RAGAVEYPER LGQPVCQYYM RTGMCKFGVS CKFHHPKQGV  120
GSAIPVTLNY YGFPLRPGER ECSYYIKTGQ CKYGATCKFH HPQPAGIQFP TPGAAPQYGV  180
VVARSPVLSS YGPYGSVLLP PSMVPYHSWS PYPATLGPVA SSSTQPSTGS TSVYGVTQLS  240
PPVSGFPGQY QPLLPSFGAS SGDQKEQSLP HRPDQPECQY YMRTGYCKYG SSCRYHHPTD  300
LVPQEASVWL SPIGLPLRP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010037077.10.0PREDICTED: zinc finger CCCH domain-containing protein 34 isoform X1
RefseqXP_018723631.10.0PREDICTED: zinc finger CCCH domain-containing protein 34 isoform X2
SwissprotQ6NPN31e-107C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBLA0A059D2230.0A0A059D223_EUCGR; Uncharacterized protein
STRINGXP_010037077.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.11e-103C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]