PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC039591.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family TCP
Protein Properties Length: 509aa    MW: 54295.5 Da    PI: 7.9445
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC039591.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP116.92.6e-36832452134
           TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........................ssssasec 73 
                    g+kdrhsk+ T++g+RdRRvRls+ +a++f+d+qd+LG+d++sk++eWL+++a  +i el+++                         +       
  EcC039591.10  83 SGGKDRHSKVLTSKGLRDRRVRLSVATAIQFYDIQDRLGYDQPSKAVEWLIKAASDSIAELPSLsgsfpetpqqfsdekqrasdggteqE------- 172
                   579*************************************************************98886555555554444444433220....... PP

           TCP  74 eaesssssasnsssg.....................kaaksaakskksqksaasalnlak.esr....akarararertrekmrikn 134
                                 +                      + +++a+s++s++s+ s l+l++ e r    a+ar+ra+ert++++ ++n
  EcC039591.10 173 --------------HgfdsaeveldgdsnfqqqnqnLSLSKSACSSNSENSKGSSLSLSQsEVRanrmARARERAKERTAKEKETNN 245
                   ..............2333333333333333333333555666666666666666677777666644456666666665555555544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.1E-4084243IPR005333Transcription factor, TCP
PROSITE profilePS5136930.19185143IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MEVEEIQTQA KFPRVGNGTS RRIDSVKVRP KIGDQQYPDD EEDGAQQKHS LNLAAAGIGP  60
AGSGTNGLRG WHSSRIVRVS RSSGGKDRHS KVLTSKGLRD RRVRLSVATA IQFYDIQDRL  120
GYDQPSKAVE WLIKAASDSI AELPSLSGSF PETPQQFSDE KQRASDGGTE QEHGFDSAEV  180
ELDGDSNFQQ QNQNLSLSKS ACSSNSENSK GSSLSLSQSE VRANRMARAR ERAKERTAKE  240
KETNNQNLNA IAHNSSYIEL LTGGAMSTGN NTAAATNATT AVATTTSSPS GSGEANLFHK  300
AAPRPWNSMT MEYITSSLFG AQFSRGHPHH TSGGFPGQIQ TGNSTNSLPQ AMQVPAFTIS  360
SAESGGGGSH HQELPHYSFV PDHLIPVAAA TGTSQPEYLN FSISSTSSSG LGGFNRGTLQ  420
SNSSSPSLLP NHLQRFATPI ATPMDGPSMQ FLLGTAMPIA VETNHHHQNH HIAQFPSGID  480
GRLQLCYSDG TRQATAAAAS QHKGKTKNG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A5e-2390144155Putative transcription factor PCF6
5zkt_B5e-2390144155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00006PBMTransfer from 493022Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010052045.10.0PREDICTED: transcription factor TCP2-like
RefseqXP_010052047.10.0PREDICTED: transcription factor TCP2-like
TrEMBLA0A2I4GUS81e-155A0A2I4GUS8_JUGRE; transcription factor TCP2-like
STRINGXP_010052045.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76152539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.23e-33TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2