PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC039386.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | B3 | ||||||||
Protein Properties | Length: 276aa MW: 30155.1 Da PI: 6.9231 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 108.5 | 3e-34 | 72 | 171 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+k ltpsdv+k++rlv+pk++ae+h e +++l++edesg+ W+++++y+ +s++yvltkGW++Fvk+++L++gD+v+F++d+ + ++l++ EcC039386.10 72 FEKPLTPSDVGKLNRLVIPKQHAEKHfplV--GEATQQLSFEDESGKWWRFRYSYWSSSQSYVLTKGWSRFVKDKRLDAGDVVLFHRDRADAERLFI 166 99*************************653..455668************************************************99889999*** PP EEE-S CS B3 95 kvfrk 99 +++r+ EcC039386.10 167 GWRRR 171 ***97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 6.9E-43 | 64 | 180 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.7E-32 | 68 | 173 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.62E-25 | 70 | 162 | No hit | No description |
SMART | SM01019 | 1.1E-26 | 72 | 172 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.3E-31 | 72 | 171 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 15.002 | 72 | 172 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010073 | Biological Process | meristem maintenance | ||||
GO:0010358 | Biological Process | leaf shaping | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
MSLNHPLSTS DGTPNTLWWT THPAMFRQHN LLLNFNPTDD DPQDEGSPPP PYVLRGAPPP 60 AEPSPAEKEP MFEKPLTPSD VGKLNRLVIP KQHAEKHFPL VGEATQQLSF EDESGKWWRF 120 RYSYWSSSQS YVLTKGWSRF VKDKRLDAGD VVLFHRDRAD AERLFIGWRR RGESSPGASA 180 VAAETRVGGG GGGGGFYAGR RPYPGHNDGP SQPGSYTHGQ AGGAPAAGNN PRRVRLFGVN 240 LECQLDGDEE SEPPGSSHGP TGHAFSSNSS NYTPSH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 1e-45 | 66 | 171 | 2 | 113 | B3 domain-containing transcription factor NGA1 |
5os9_B | 1e-45 | 66 | 171 | 2 | 113 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010059417.1 | 1e-158 | PREDICTED: B3 domain-containing protein At2g36080 | ||||
Swissprot | Q9FNI3 | 5e-64 | Y5625_ARATH; B3 domain-containing protein At5g06250 | ||||
TrEMBL | A0A059DJE9 | 1e-157 | A0A059DJE9_EUCGR; Uncharacterized protein | ||||
STRING | XP_010059417.1 | 1e-158 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1220 | 28 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06250.2 | 9e-52 | B3 family protein |