PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC039350.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family TCP
Protein Properties Length: 435aa    MW: 49448.6 Da    PI: 8.3454
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC039350.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP129.82.7e-401152563133
           TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........ssssaseceaesssssasnsssg... 88 
                    kkdrhski T++g+RdRR+Rls+++a++fF Lqd+LG+dk+skti WLl ++ paikel++         s        + +s+ s s+ +     
  EcC039350.10 115 SKKDRHSKINTAQGMRDRRMRLSVDVAREFFNLQDMLGLDKASKTIKWLLVKSTPAIKELARGlqktkngeS-------IPIRSVPSRSEREMMpei 204
                   69***********************************************************99655443320.......222222222222222334 PP

           TCP  89 .......kaaksaakskksqksaasalnlakesrakarararertrekmrik 133
                          ++++ a+k+k +q+++  ++   +esrakar+ra++rtrekm+++
  EcC039350.10 205 griakdnQQETIAKKRKVKQSRKIVFRPTGRESRAKARERAKQRTREKMMLQ 256
                   4555543333333344444444444577778******************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036347.4E-39115254IPR005333Transcription factor, TCP
PROSITE profilePS5136933.823116174IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.444235252IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048831Biological Processregulation of shoot system development
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MFHSNHSTID LISSSERPIL QHPIFHDFSF DSRPEDLPFS LYSLPSPFIF NDDENEDGAS  60
LQIHHDLSSQ GHQPLNPHHQ MTDLMTFSAG DSIGHNTGVK PEATAEQVVP TERSSKKDRH  120
SKINTAQGMR DRRMRLSVDV AREFFNLQDM LGLDKASKTI KWLLVKSTPA IKELARGLQK  180
TKNGESIPIR SVPSRSEREM MPEIGRIAKD NQQETIAKKR KVKQSRKIVF RPTGRESRAK  240
ARERAKQRTR EKMMLQGLNR GDRPCKEWTE SDMNDRLPSN CSIGTSEDSG NRGSGIEVPN  300
MDVQVQFEGE SSYDQKRHYS ERNETVADNA SEVHNFNHPQ STRVEVSAGF NIFPLDKYNC  360
QPTIRSIQID WLVICFVLCF LSNERHQASM NCQIPMKSSA DQCMNSCSIR SLNLNFFTSH  420
GKPTPANICA KLDNF
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00215DAPTransfer from AT1G67260Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010037348.10.0PREDICTED: transcription factor CYCLOIDEA
RefseqXP_018720591.10.0PREDICTED: transcription factor CYCLOIDEA
RefseqXP_018720592.10.0PREDICTED: transcription factor CYCLOIDEA
TrEMBLA0A059A6S20.0A0A059A6S2_EUCGR; Uncharacterized protein
STRINGXP_010037346.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72692742
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.24e-26TCP family protein