PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | EcC039244.20 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 229aa MW: 26408.5 Da PI: 9.8324 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 163.1 | 1e-50 | 15 | 157 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.. 95 +pGfrFhPtdeelv +yLk+k++++ + + e+ik++diyk++PwdLpk +++ +ekewyf+++rd+ky+++ r+nr+t+ g+Wkatg+d++++s+ EcC039244.20 15 MPGFRFHPTDEELVGFYLKRKIKKQAICV-EIIKQLDIYKYDPWDLPKlATTLGEKEWYFYCPRDRKYRNSARPNRVTRGGFWKATGTDRPIYSSlq 110 69************************999.89***************535566999**************************************876 PP NAM 96 ....kgel............vglkktLvfykgrapkgektdWvmheyrl 128 + + +glkk+Lvfykgra kg+ktdW+mhe+rl EcC039244.20 111 qlnsS--NvdvtsikcsnniIGLKKSLVFYKGRAGKGVKTDWMMHEFRL 157 66550..1555666666666***************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.98E-54 | 14 | 188 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 53.553 | 14 | 188 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.9E-26 | 16 | 157 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 229 aa Download sequence Send to blast |
MEERHEGETM EELIMPGFRF HPTDEELVGF YLKRKIKKQA ICVEIIKQLD IYKYDPWDLP 60 KLATTLGEKE WYFYCPRDRK YRNSARPNRV TRGGFWKATG TDRPIYSSLQ QLNSSNVDVT 120 SIKCSNNIIG LKKSLVFYKG RAGKGVKTDW MMHEFRLPSL SDLAATPLPS RKSLPAHDSW 180 AICRIFKKPK STTQKALSHS LCLYPPSATP PPSDHHHHIP SPCPQDKFM |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 5e-49 | 1 | 188 | 1 | 168 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010044741.1 | 1e-171 | PREDICTED: protein FEZ-like | ||||
Swissprot | Q9FIW5 | 1e-85 | NAC94_ARATH; Putative NAC domain-containing protein 94 | ||||
TrEMBL | A0A0D2SGR3 | 2e-96 | A0A0D2SGR3_GOSRA; Uncharacterized protein | ||||
TrEMBL | W6J8Y6 | 2e-96 | W6J8Y6_GOSHI; NAC domain protein NAC50 | ||||
STRING | XP_010044741.1 | 1e-170 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM306 | 28 | 200 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G39820.1 | 9e-86 | NAC domain containing protein 94 |