PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC038884.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

bZIP

Protein Properties

Length: 259aa MW: 28414.9 Da PI: 6.8797

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC038884.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.9	3.3e-11	90	129	10	49
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 10 kqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkel 49 ++N++A r++R++Kka +++Le++v+eL +N++L +l EcC038884.10 90 NARNKVAVRKYREKKKAHTACLEQEVQELRMKNQQLNGKL 129 68**********************************8776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	0.0018	73	148	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	6.6E-11	86	149	No hit	No description
SuperFamily	SSF57959	4.19E-8	87	136	No hit	No description
Pfam	PF07716	2.1E-9	90	128	IPR004827	Basic-leucine zipper domain
CDD	cd14686	1.70E-10	91	125	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MDDGEVEVPD PVLVPNASSS SSLQGSASMD SLIEELWKNT RTCTHTHTCN PPGPDAAHTH 60 TCFHTHTQMF SSEDDEKLKG RKPCTKVKTN ARNKVAVRKY REKKKAHTAC LEQEVQELRM 120 KNQQLNGKLH FQANLYDEVI RLRRLLLDLR GKIDFELGLM PFQKPCNYTS IKEGDCGVQS 180 GSEPVGLQCL TGLTCFHPHT GSSSLAGIGR SDDAMVSLAG ENCQPAIGDC QFQANVGMNS 240 DGHNSNTVQK IASTTSQVE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporter ZIP12 during growth in zinc-deficient conditions. ZIP12 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269\|PubMed:20479230, ECO:0000269\|PubMed:26306426}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by zinc deficiency. {ECO:0000269\|PubMed:20479230}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010067780.1	1e-147	PREDICTED: basic leucine zipper 19
Refseq	XP_018732928.1	1e-147	PREDICTED: basic leucine zipper 19
Swissprot	Q8GTS2	2e-42	BZP23_ARATH; Basic leucine zipper 23
TrEMBL	A0A059BIF2	1e-146	A0A059BIF2_EUCGR; Uncharacterized protein
STRING	XP_010067780.1	1e-146	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2036	28	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35040.1	8e-15	bZIP family protein

Publications ? help Back to Top
Azevedo H, et al. Transcriptomic profiling of Arabidopsis gene expression in response to varying micronutrient zinc supply. Genom Data, 2016. 7: p. 256-8 [PMID:26981422] Castro PH, et al. Phylogenetic analysis of F-bZIP transcription factors indicates conservation of the zinc deficiency response across land plants. Sci Rep, 2017. 7(1): p. 3806 [PMID:28630437] Nazri AZ,Griffin JHC,Peaston KA,Alexander-Webber DGA,Williams LE F-group bZIPs in barley-a role in Zn deficiency. Plant Cell Environ., 2017. 40(11): p. 2754-2770 [PMID:28763829] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]